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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S5...' > 
  2. Transcript 'Cisavi.CG.ENS81.R77....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R77.1550527-1552814.07758.t

Possible name(s)

LSM10; LSM2; SNRPD1

Gene model

Cisavi.CG.ENS81.R77.1550527-1552814

Location

R77 [1,550,526 / 1,552,814]

Sequences

Amino acid sequence

Length: 125

>Cisavi.CG.ENS81.R77.1550527-1552814.07758.p
MKLARFLMKLSHETVTIELKNGTQVHGTITGVDICMNTHLKSVKMTVKNRDPVNLDSLSI
RGNNIRYYILPDSLPLDTLLVDEGPRVPRGGFRDRGRGRGGRGGGRGGRGRGGRGRGRGG
PPRRY

Nucleotide sequence

Length: 618

>Cisavi.CG.ENS81.R77.1550527-1552814.07758.t
ACGATTTTGCATCGTTCATCTAATATTTGTAGTAAAGTTCAACTTCTTTACGCCGATTTT
GTAAATCAAGAGTTATCATGAAGCTTGCCAGATTCTTGATGAAACTTAGTCACGAGACAG
TGACAATTGAATTAAAAAATGGCACACAAGTCCACGGGACTATCACAGGCGTCGATATCT
GTATGAACACGCACCTCAAGTCTGTGAAAATGACCGTCAAGAACCGAGACCCAGTTAACC
TGGACAGTCTTAGTATCCGAGGGAACAACATCAGATACTACATTCTGCCGGACAGTTTGC
CTCTGGACACCCTTCTCGTTGACGAGGGACCAAGGGTGCCAAGAGGAGGGTTCAGAGATC
GTGGCAGAGGTCGTGGCGGGCGTGGGGGCGGAAGAGGTGGGCGTGGTCGTGGAGGAAGGG
GGCGTGGTCGAGGAGGACCACCTCGTAGATATTAGATCGTCCATCATAATTTCAATTCGC
GATGACGTTTTCACACTTGAAACCGAATGGCTTCTGGTCCGTTCCCGTTTTAGGTTAACG
TCGTCGCGGAATTTATTTGGATTTTTACGCAAAATCGTGACTTTTAATGAATAAAACAAC
GGCTGCCGAGTTTTTAAA

InterProScan

PANTHER
LSm4/Sm_D1/D3 (IPR027141) - T[1-103] 1.2E-48
CDD
Sm_D1 (IPR034102) - T[2-87] 2.01075E-57
SMART
LSM_dom_euk/arc (IPR001163) - T[5-70] 6.2E-17
Pfam
LSM_dom_euk/arc (IPR001163) - T[5-69] 2.2E-18
SUPERFAMILY
LSM_dom_sf (IPR010920) - T[5-124] 1.0E-27

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SMD1_HUMAN 85.057 % 159 7.71E-52