- Transcript 'Cisavi.CG.ENS81.R77....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R77.1240605-1250508.06285.t
Possible name(s)
VPS36
Gene model
Location
R77 [1,240,604 / 1,250,508]
Amino acid sequence
Length: 384
>Cisavi.CG.ENS81.R77.1240605-1250508.06285.p
MDRFYWSNKGIEAGETKSFCQNGVRIYDGDQKTSYDDGVLTLTSHKLMWMDSSNSQICIS
LSLSLAVFCERHGGGIGKSAKVSLHLQPVPQDRLPGPVARSSFGFIRFAFKHGGDVEFNH
KMEQAIHNKAWEKSLRKSSHSTPEMRPLRASGIIGIERKMEAEKKMTDQSISVAFKDLTK
LMEKAKEMVTLSSTIAEKIKDKKGDITDDETVKFQSYLLSLGIPNPVTKQTHGSGTHYHQ
QLAHEIARSLKPQIEKSGGMILLTDAYCRINRARGMELLSPEDLLNACRVLSHLNLSIKL
RQFDTGVMVLQLDSHSDETVVKQTTELVTDSNSLSSEELASLVDISVLLAKERLLLAESS
GAVCRDDADQGLRFYPNLFLTKSR
Nucleotide sequence
Length: 1,777
>Cisavi.CG.ENS81.R77.1240605-1250508.06285.t
CCGAAATCTAATGAAAACAATTCATGTGGAACCAATATATATGTTGTGTGTTATCGAAAG
TCTCTTTAAAAACTAGTAGGTTAGTATGGATAGATTTTATTGGTCCAATAAGGGCATAGA
AGCTGGCGAGACAAAATCATTTTGTCAAAATGGTGTACGTATTTACGACGGAGACCAAAA
GACAAGCTATGATGATGGCGTTCTCACTTTAACCTCCCACAAGCTAATGTGGATGGACAG
CAGCAACTCTCAAATCTGCATTTCCTTGTCTCTAAGTTTAGCTGTGTTCTGTGAGAGGCA
TGGTGGGGGAATCGGTAAAAGCGCGAAAGTGTCGTTACACCTACAACCAGTCCCACAGGA
CCGATTGCCCGGTCCAGTTGCTCGAAGTTCCTTTGGTTTTATTCGATTCGCTTTTAAGCA
TGGTGGCGATGTGGAATTCAATCATAAAATGGAGCAAGCCATCCACAACAAAGCATGGGA
AAAATCGCTAAGAAAATCATCTCATTCTACTCCAGAGATGCGCCCATTGAGAGCATCTGG
GATTATTGGAATCGAGAGGAAAATGGAAGCTGAAAAAAAGATGACGGATCAAAGCATCTC
AGTTGCATTCAAAGACCTCACGAAGCTGATGGAAAAGGCGAAAGAAATGGTTACCCTCTC
CTCAACTATTGCCGAGAAGATTAAGGACAAGAAAGGGGATATAACAGATGATGAGACAGT
AAAGTTCCAATCGTACCTGCTTAGTCTTGGTATCCCAAACCCGGTTACGAAGCAAACCCA
CGGTTCGGGGACCCATTACCACCAGCAGCTTGCTCATGAGATCGCTCGCTCTCTCAAACC
TCAGATTGAGAAGTCTGGCGGGATGATTTTGCTCACCGATGCTTATTGTCGGATCAATAG
AGCACGGGGGATGGAACTATTATCACCTGAAGATTTACTCAACGCATGCCGAGTGCTGTC
CCATCTCAATCTGTCAATCAAACTCCGACAGTTCGATACTGGGGTTATGGTGCTACAACT
GGATTCCCATTCAGATGAGACAGTTGTAAAGCAAACCACTGAATTAGTAACTGACAGCAA
CAGCTTAAGCTCCGAAGAGCTAGCCAGCCTAGTTGACATATCAGTTCTACTCGCGAAGGA
GCGTTTACTTCTTGCCGAGTCTTCTGGTGCCGTGTGCAGAGACGACGCCGACCAAGGACT
CCGATTTTACCCGAATTTATTCTTAACAAAATCGCGATGATGATGAAAATGTGCTAAAAA
ATCCGGCGCGCAAGTGCAATGATACGAACTAAGTTGGGCGATGACTTTATAGTTTATTCA
TTTTTGCCCCAGTTTTTTAAAAATGGCAAACGAATACAATCACAACACAGGAACGGGAAT
AGACGGCAAAACGAACAGTCGTTGAAACACGTCATTTAAAAAAAAAAGATTTAATTTAAT
AAATATAGCAGACGCGACCGCCAAACCTAGACGAAAGAACAATATTAAGCGATCCAAATT
TAATTAAGATCAAAACGATAAAGAGTCCTGAAGTGTGCGGTAAAGCGCGACCAGTACTAT
GGTAGAGCCGGCAAACTTTGCAATAACTTACACGATGCTTGTTTTGTTGCTTGAGATTGT
ATACGATTCTGATTGATGAACTTGATTTCACACGCCCCAAAACATTTATATGACTAGTTT
TAAGCACCTTTTATGTGGCAACTGCGCTTAACGTTGCTAAGTAACGATTGAATTGTGCAT
TAAGACGGCGTTGTTGCAATTAAATGGATTATAACGT
| ProSiteProfiles |
GLUE_dom (IPR021648) - T[1-138] 19.279 |
| Gene3D |
PH-like_dom_sf (IPR011993) - T[1-137] 1.0E-43 |
| Pfam |
GLUE_dom (IPR021648) - T[9-87] 8.4E-13 |
| PANTHER |
Vps36 (IPR037855) - T[11-383] 1.4E-129 |
| SUPERFAMILY |
WH_DNA-bd_sf (IPR036390) - T[182-308] 7.34E-10 - T[274-381] 4.22E-25 |
| Gene3D |
WH-like_DNA-bd_sf (IPR036388) - T[234-313] 1.9E-32 - T[314-383] 9.3E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS36_HUMAN | 53.109 % | 433 | 7.27E-152 |
