- Transcript 'Cisavi.CG.ENS81.R7.2...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R7.2118166-2120118.11131.t
Possible name(s)
GRWD1; RBBP4; RBBP7
Gene model
Location
R7 [2,118,171 / 2,120,085]
Amino acid sequence
Length: 410
>Cisavi.CG.ENS81.R7.2118166-2120118.11131.p
EKDGNYDDSVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTCQWLPDVTKPEGKDYT
IHRLILGTHTSDEQNHLIIASVQLPTDDAQFDASHYDSERGEFGGFGSVSGKIEIEIKIN
HEGEVNRASDVLVFDYTKHPSKPDPCGECNPDLRLRGHQKEGYGLSWNPNLSGHLLSASD
DHTICLWDVGSSPREGRILDARSIYTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTR
STTCNKPSHVVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKD
EIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFVHGGHTAKIS
DFSWNPNEPWVSCSVSEDNIMQVWQMAENIYNDEEPDGAASSTPAAELEQ
Nucleotide sequence
Length: 1,527
>Cisavi.CG.ENS81.R7.2118166-2120118.11131.t
GAAAAAGATGGAAATTATGACGACTCTGTCGAAGAGCGTGTGATTAACGAAGAATACAAG
ATTTGGAAGAAGAACACTCCATTTCTGTATGACCTTGTTATGACCCATGCCCTTGAGTGG
CCAAGTCTTACTTGTCAGTGGCTTCCTGATGTCACAAAACCTGAAGGAAAAGATTATACG
ATTCACCGACTAATCCTTGGCACGCATACATCTGATGAACAAAATCATTTGATAATCGCA
AGCGTCCAACTCCCAACCGATGATGCTCAGTTTGATGCCTCCCATTATGACAGTGAGCGA
GGTGAATTTGGCGGATTTGGCTCTGTAAGCGGAAAGATTGAAATAGAAATCAAAATTAAC
CATGAAGGAGAAGTAAACCGGGCAAGTGATGTATTGGTGTTTGATTACACGAAGCACCCG
AGCAAGCCTGACCCATGTGGGGAGTGCAACCCGGATCTACGGCTCCGTGGGCATCAGAAG
GAAGGGTATGGCTTGTCATGGAATCCAAACCTGAGTGGACACCTACTAAGTGCTTCCGAC
GACCACACAATCTGTCTGTGGGATGTAGGAAGTTCACCACGAGAAGGGCGAATCCTGGAC
GCACGAAGCATCTACACTGGGCACACAGCAGTGGTTGAAGACGTTTCGTGGCACTTGTTA
CATGAGAGTTTGTTTGGTTCAGTGGCTGATGACCAGAAGTTGATGATTTGGGACACAAGA
TCGACAACATGCAACAAACCCAGCCATGTTGTTGATGCCCATACAGCTGAAGTCAATTGC
CTTTCATTTAATCCCTACTCTGAGTTTATTTTAGCTACTGGTTCTGCCGATAAAACAGTG
GCTCTGTGGGATTTACGAAACCTCAAGTTAAAACTCCATTCATTTGAATCACATAAAGAT
GAAATATTTCAGGTGCAATGGTCCCCGCACAATGAGACCATCCTTGCGTCAAGTGGAACT
GACCGTAGGTTGAATGTCTGGGATCTCAGCAAGATAGGGGAGGAGCAGAGTGCCGAGGAT
GCAGAAGATGGTCCGCCAGAGCTGCTTTTTGTACACGGAGGACACACGGCAAAGATCTCC
GACTTCTCATGGAATCCAAATGAGCCATGGGTCTCTTGCTCCGTCTCCGAAGACAACATA
ATGCAAGTTTGGCAAATGGCTGAGAATATTTACAACGACGAGGAGCCAGATGGTGCTGCT
TCATCCACACCCGCAGCTGAGCTTGAGCAAAACGCATCCTAAAGTTCATTTCCATCACAG
TTCAATTTTTTGTGACATTACCACTTTTATACGCTTGACCTATAACACCAATATTAAAGA
AGAGGAGCAATATAAATTTATAAAATTTTATGCTTCATAAATTTTATAAACTTTATCTTC
TCTTTTTGGATGGTTGATAAAATTTTGTAAAAGACTTCAATATTCACAACTAATTTGTTT
ATCAAGTATCTTATCAATGTTAACGAACTGATTTCCAATGGATTATAAGTTGTTGTATAT
ATGTAATAAAATAAGGTCTACATTGTA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-403] 6.2E-156 |
| Pfam |
Histone-bd_RBBP4_N (IPR022052) - T[17-85] 8.4E-29 |
| SMART |
WD40_repeat (IPR001680) - T[148-188] 3.7E-6 - T[198-238] 0.23 - T[244-284] 1.6E-8 - T[288-328] 7.0E-7 - T[345-385] 0.016 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[149-391] 5.83E-47 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[155-189] 11.945 - T[205-247] 9.071 - T[251-287] 13.85 - T[295-337] 12.948 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[155-394] 34.776 |
| Pfam |
WD40_repeat (IPR001680) - T[155-188] 0.04 - T[204-238] 0.11 - T[246-284] 3.3E-7 - T[292-328] 3.3E-4 - T[349-384] 0.0018 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[175-189] 1.31E-8 - T[271-285] 1.31E-8 - T[315-329] 1.31E-8 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[175-189] . - T[271-285] . - T[315-329] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| GRWD1_HUMAN | 30.612 % | 117 | 5.32E-29 |
| RBBP7_HUMAN | 83.981 % | 731 | 0 |
| RBBP4_HUMAN | 87.019 % | 760 | 0 |