- Transcript 'Cisavi.CG.ENS81.R696...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R696.13762-21737.05985.t
Possible name(s)
HOXA10; HOXC10; HOXD10
Gene model
Location
R696 [13,761 / 21,737]
Amino acid sequence
Length: 416
>Cisavi.CG.ENS81.R696.13762-21737.05985.p
MDIQPQSSKEHTKQDSLFAYNVRYSAEPPYPHAGGSGAYHSIPSSAPTTINYPNYRDERG
SPTIETKREPFLPSPYAKHPGYGFQHPAGIPPNPESSFGGFTRIPTPPSNGGKYYPGGSP
QNYPTMDPEPKLATLKGSQERSSEEEGRKEEDPQHPDAFYGSSGAGAGVALPPFPGIPGI
KTTETEEWGAGGKIRTEYPAFSDVSKTTSFTGDSPNQVSTPKPEPPEDESEEGDPTKHWL
TASGRKKRVPYTKYQLLELEKEFHFNQYLSRERRLEVAKSVKLSDRQVKIWFQNRRMKWK
KERREERLRDDHHPMPGIHHPGVPHHGMPAHYTSTAAALAAAGIGHLNPHPFTNQPPMVT
DMTYGYAPSPAIPAPGRHHGVNQMAAVDFFTSWHHQYSVPPRDPTNPALQLGCMYN
Nucleotide sequence
Length: 1,461
>Cisavi.CG.ENS81.R696.13762-21737.05985.t
ATGGATATTCAACCGCAGAGTTCGAAAGAACACACGAAACAAGACTCATTGTTCGCGTAC
AATGTCCGCTACAGCGCGGAACCGCCATACCCCCATGCGGGGGGGTCGGGGGCATACCAT
TCCATCCCTAGTTCGGCGCCTACCACAATCAACTATCCAAACTACAGGGACGAACGGGGA
TCCCCCACCATTGAAACCAAGCGGGAACCCTTCCTACCCAGCCCATATGCAAAACACCCT
GGATACGGATTCCAACATCCGGCGGGAATTCCCCCAAACCCGGAATCGAGTTTCGGTGGT
TTCACCCGAATCCCGACTCCCCCAAGCAACGGGGGGAAATACTACCCCGGGGGTTCCCCG
CAGAACTACCCCACCATGGACCCCGAACCGAAACTGGCGACGCTGAAGGGAAGTCAGGAG
AGGAGTTCGGAGGAGGAGGGGAGGAAGGAGGAAGATCCGCAACATCCGGATGCTTTCTAC
GGATCCTCCGGAGCAGGAGCGGGAGTTGCTCTTCCGCCCTTCCCGGGGATACCTGGGATC
AAAACCACGGAAACGGAGGAATGGGGCGCCGGGGGTAAGATTCGAACCGAATACCCAGCG
TTTAGTGACGTCAGCAAAACGACGTCATTCACCGGGGATTCCCCGAACCAAGTTTCAACT
CCGAAACCTGAGCCGCCCGAGGATGAATCTGAAGAAGGCGACCCAACCAAACATTGGCTG
ACCGCCAGTGGGCGCAAGAAACGCGTGCCGTACACAAAGTACCAACTACTGGAGTTGGAG
AAAGAATTTCATTTCAATCAATATCTTTCACGTGAGAGGCGATTGGAGGTCGCCAAATCG
GTGAAGCTGAGCGACCGACAAGTGAAGATTTGGTTCCAAAATCGACGAATGAAGTGGAAG
AAGGAACGACGTGAGGAACGACTGAGGGATGACCATCACCCGATGCCGGGGATCCACCAC
CCGGGAGTTCCCCACCATGGAATGCCAGCTCATTACACCAGCACAGCTGCAGCACTGGCA
GCGGCCGGAATCGGTCATTTGAACCCCCACCCATTCACCAACCAGCCGCCCATGGTGACG
GATATGACGTATGGCTACGCACCGTCGCCCGCCATTCCAGCTCCAGGGCGCCACCACGGG
GTAAACCAGATGGCCGCAGTCGACTTCTTCACGAGTTGGCATCACCAGTACTCTGTCCCC
CCACGTGACCCCACCAACCCCGCCTTACAACTCGGGTGCATGTACAACTGACGTCAGCAC
ATGACGTCACCGGGTTCAGTGAAGCGTGAAACACGGCGGCCATGTTTGAGCCCAATATTA
TAATGAACACGACATGTCGCTTGAAACATGTTCCTTTGTTTTCTCGTTTCCTTCTTAACT
TTATATCATATTTCATTCCGGATTACGCAATCCGTAGTGCATCATGCTAATAACGTACCG
TATCACGCATGCAAACCTACC
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[231-304] 1.5E-25 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[242-302] 21.411 |
| SMART |
Homeobox_dom (IPR001356) - T[244-306] 1.5E-26 |
| CDD |
Homeobox_dom (IPR001356) - T[245-303] 2.42358E-26 |
| Pfam |
Homeobox_dom (IPR001356) - T[245-301] 2.1E-21 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[266-277] 3.6E-7 - T[281-291] 3.6E-7 - T[291-300] 3.6E-7 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[277-300] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXD10_HUMAN | 66.667 % | 132 | 2.77E-35 |
| HXC10_HUMAN | 48.649 % | 122 | 1.58E-31 |
| HXA10_HUMAN | 51.969 % | 127 | 1.13E-32 |
