- Transcript 'Cisavi.CG.ENS81.R67....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R67.1599549-1617064.15967.t
Possible name(s)
SOX11; SOX12; SOX4
Gene model
Location
R67 [1,599,548 / 1,617,064]
Amino acid sequence
Length: 526
>Cisavi.CG.ENS81.R67.1599549-1617064.15967.p
MASTSRPLKSSAELSSLQSGVNMDGSPGSPESGLGSDWDLDTDEILQSSSHGVARKSIDL
LHASSPSPTLECINDCPESGGHDVFDGFPIKTEPDRKQIPMGSPGKSKREDILNELKNLP
ATQIKLPPPSRSSQKKLAARPGYIKRPMNAFMIWSQIERRKIMEKTPDLHNAEISRNLGR
LWKEQTEYTKRPFLIEAERLRLQMCDYPDNPKKKCKGKKSLISSRTLGYFAHPDSDQSNE
TDLSKIEALKAANKKTNKRHARKRKSSECSTTTPEHKPKVLASINPVPSNSGANEAMFDS
NAITNNLLTAVKVEPRVPPLPASPATTFVTAVPAKACRYEVTTPVPAQPCNSTQRLGLLN
GTLLKTLTEGNRQFILVSGANDVISCSTNSVMTSPQRTIVACQQQRTANFGFIPICDGNG
QERVLNIANGCVQAANPGVTNSPPQQATHCVVPAVFPSFDDDFRHDYLKEETQIDLNQIT
LSSDISYADPCRKKSHFEFSDYDTDEIKQLIEGSDLAWLRDDICCL
Nucleotide sequence
Length: 1,581
>Cisavi.CG.ENS81.R67.1599549-1617064.15967.t
ATGGCTAGTACATCAAGACCACTGAAATCATCGGCCGAACTTTCGAGCTTACAGTCCGGT
GTAAATATGGACGGTAGCCCGGGCTCGCCCGAATCGGGTTTGGGCTCCGACTGGGATTTG
GACACAGATGAAATTCTACAATCAAGCTCGCATGGCGTAGCTAGAAAGTCGATTGACCTC
CTTCATGCTTCGTCGCCGTCTCCAACATTGGAGTGTATTAACGACTGCCCAGAGTCCGGC
GGCCATGACGTGTTTGATGGATTCCCAATTAAGACCGAACCAGACAGAAAGCAAATTCCT
ATGGGCTCGCCGGGCAAAAGCAAAAGAGAGGACATATTAAATGAACTAAAGAACCTGCCG
GCTACGCAGATCAAGTTGCCGCCCCCTTCCCGAAGTAGCCAAAAGAAACTCGCTGCCCGA
CCTGGCTATATTAAGAGACCAATGAACGCCTTTATGATCTGGTCGCAGATCGAGCGAAGA
AAAATAATGGAAAAAACGCCGGACCTCCACAACGCTGAAATTAGTCGAAATCTAGGTCGA
CTCTGGAAGGAACAGACTGAATATACCAAGCGACCGTTTCTAATCGAAGCAGAGCGATTA
CGACTACAGATGTGCGACTATCCGGATAACCCGAAGAAAAAATGCAAAGGCAAAAAATCT
TTGATATCCAGTAGAACTCTCGGCTATTTTGCACACCCCGACTCAGATCAATCCAATGAA
ACCGACCTGTCGAAAATCGAAGCCTTAAAAGCGGCCAATAAGAAGACGAACAAACGACAC
GCACGGAAGCGAAAGTCGTCGGAATGTAGCACTACAACGCCCGAGCACAAACCAAAGGTT
CTAGCCTCGATCAATCCAGTTCCTTCCAACTCAGGTGCCAATGAAGCCATGTTCGACAGT
AACGCGATCACGAACAACCTACTCACGGCCGTGAAAGTGGAGCCGCGCGTCCCACCGCTG
CCCGCCTCACCCGCCACAACCTTTGTCACTGCCGTGCCTGCCAAAGCGTGTCGGTACGAA
GTCACAACCCCCGTTCCCGCTCAGCCCTGCAATTCGACCCAGCGACTCGGTTTGCTGAAC
GGAACCCTCCTCAAAACCCTGACGGAAGGAAACCGCCAGTTCATCCTCGTTTCCGGTGCT
AATGATGTCATATCCTGCTCGACGAACTCGGTGATGACGTCACCACAGCGAACGATAGTC
GCGTGCCAGCAGCAACGGACCGCGAACTTCGGGTTTATCCCCATTTGTGACGGCAACGGA
CAGGAGAGAGTGTTAAACATAGCAAACGGTTGCGTGCAGGCCGCCAACCCCGGAGTTACG
AATTCACCACCACAGCAAGCGACCCACTGTGTTGTTCCAGCTGTTTTTCCCTCATTCGAC
GACGATTTCCGACACGACTATTTAAAGGAGGAAACGCAGATTGATTTAAACCAGATCACC
CTGAGCAGCGATATTTCCTACGCCGACCCCTGTCGAAAAAAATCTCACTTCGAATTCTCC
GACTACGATACCGACGAAATCAAACAACTCATTGAGGGCTCCGACCTAGCGTGGCTCAGG
GACGACATCTGCTGTTTGTGA
| SUPERFAMILY |
HMG_box_dom_sf (IPR036910) - T[127-203] 6.94E-20 |
| Gene3D |
HMG_box_dom_sf (IPR036910) - T[129-210] 3.0E-18 |
| PANTHER |
SOX-11 (IPR029551) - T[141-266] 2.3E-40 - T[493-516] 2.3E-40 |
| SMART |
HMG_box_dom (IPR009071) - T[143-212] 6.6E-14 |
| ProSiteProfiles |
HMG_box_dom (IPR009071) - T[144-203] 16.711 |
| Pfam |
HMG_box_dom (IPR009071) - T[144-203] 2.7E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SOX11_HUMAN | 64.557 % | 107 | 4.04E-25 |
| SOX4_HUMAN | 65.823 % | 110 | 8.61E-26 |
| SOX12_HUMAN | 63.75 % | 104 | 6.97E-25 |