Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R58.1101765-1103770.13437.t

Possible name(s)

TUBA1C; TUBA3C; TUBA3D

Gene model

Cisavi.CG.ENS81.R58.1101765-1103770

Location

R58 [1,101,793 / 1,103,549]

Sequences

Amino acid sequence

Length: 450

>Cisavi.CG.ENS81.R58.1101765-1103770.13437.p
RECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGNDDSFNTFFSETGAGKH
VPRAVFVDLEPTVVDEIRNGTYRQLFHPEQMITGKEDAANNYARGHYTIGKEIVDVVLDR
IRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAVYPAPQVSTAV
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVDRPSYTNLNRLIGQIVSSITAS
LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVGEITNACFEPCNQ
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIACIKTKRTIQFVDWCPTGFKVGINYQPPT
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
REDLAALEKDYEEVGLDSGDGDGEDEEDNY

Nucleotide sequence

Length: 1,455

>Cisavi.CG.ENS81.R58.1101765-1103770.13437.t
CGGGAGTGTATCTCAATTCATGTTGGTCAAGCCGGTGTTCAGATCGGCAATGCTTGTTGG
GAGCTGTACTGCCTGGAGCATGGAATTCAACCTGATGGGCAAATGCCGAGTGACAAGACA
GTTGGCGGAAACGACGACTCCTTCAACACTTTCTTTAGCGAGACCGGTGCTGGAAAACAT
GTACCCAGGGCGGTATTTGTAGACCTCGAGCCAACGGTTGTAGATGAAATTCGCAATGGT
ACGTACCGTCAATTGTTTCACCCGGAACAAATGATCACCGGAAAAGAGGACGCGGCAAAC
AACTATGCACGTGGTCATTACACCATTGGAAAGGAGATTGTCGACGTTGTTCTCGACCGT
ATACGAAAGCTGTCGGATCAATGCACCGGTTTGCAGGGTTTCCTAATTTTTCATTCCTTC
GGTGGTGGAACTGGTTCTGGTTTTGCATCGCTCTTGATGGAACGACTATCCGTAGATTAC
GGGAAGAAGTCTAAATTGGAATTTGCAGTTTACCCTGCCCCGCAGGTGTCGACGGCAGTC
GTTGAGCCTTACAACTCTATCCTTACGACCCATACAACGCTGGAACATTCCGATTGTGCG
TTTATGGTTGATAACGAGGCAATCTATGACATATGCCGTCGTAATTTGGACGTGGATCGT
CCATCTTACACTAATCTCAACCGGTTGATTGGTCAGATCGTGTCTTCGATCACAGCTTCG
CTACGTTTCGATGGAGCTCTAAATGTGGACTTGACAGAATTTCAAACCAATTTGGTGCCG
TACCCTCGAATTCATTTTCCGTTGGTCACTTACGCTCCGGTCATATCTGCCGAAAAAGCT
TACCACGAGCAGCTGTCCGTTGGCGAGATTACCAATGCTTGCTTCGAGCCTTGTAACCAG
ATGGTTAAATGTGATCCTCGTCATGGAAAGTACATGGCTTGCTGTATGCTGTACCGTGGA
GACGTTGTGCCCAAGGACGTCAATGCTGCGATTGCTTGCATCAAAACAAAGCGAACCATT
CAGTTTGTGGATTGGTGCCCGACTGGATTCAAGGTTGGGATCAACTACCAACCACCAACC
GTGGTACCAGGTGGTGACTTGGCGAAAGTTCAACGAGCAGTCTGCATGCTGAGCAACACG
ACCGCTATCGCAGAGGCTTGGGCTCGTCTCGACCACAAGTTCGATTTGATGTACGCCAAG
CGTGCATTTGTCCACTGGTATGTCGGTGAAGGTATGGAGGAGGGTGAATTCTCCGAAGCC
AGGGAGGATCTTGCTGCATTGGAGAAAGATTACGAAGAAGTTGGGTTGGACTCTGGAGAT
GGTGATGGGGAAGATGAAGAAGATAATTACTAAACCGGATTTTAATTTAATTGTCCTTCT
AATATTTTTTATTTTCCTTTCTCTTTACCTAGCTTATAGCTTGGTGATTTTGTTTCAGAT
ATTGAGTTGAGGTTT

InterProScan

SUPERFAMILY	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-243] 4.45E-100
Gene3D	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-267] 8.1E-131
PANTHER	Tubulin (IPR000217) - T[1-446] 0.0
Pfam	Tubulin_FtsZ_GTPase (IPR003008) - T[2-212] 3.4E-68
PRINTS	Tubulin (IPR000217) - T[9-29] 1.7E-90 - T[52-71] 1.7E-90 - T[94-105] 1.7E-90 - T[107-131] 1.7E-90 - T[133-151] 1.7E-90 - T[152-173] 1.7E-90 - T[177-190] 1.7E-90 - T[191-211] 1.7E-90 - T[379-407] 1.7E-90
PRINTS	Alpha_tubulin (IPR002452) - T[17-32] 1.5E-117 - T[44-57] 1.5E-117 - T[87-100] 1.5E-117 - T[119-127] 1.5E-117 - T[147-159] 1.5E-117 - T[160-171] 1.5E-117 - T[213-225] 1.5E-117 - T[273-288] 1.5E-117 - T[320-341] 1.5E-117 - T[346-359] 1.5E-117 - T[359-378] 1.5E-117 - T[384-400] 1.5E-117 - T[421-437] 1.5E-117
SMART	Tubulin_FtsZ_GTPase (IPR003008) - T[48-245] 2.1E-82
ProSitePatterns	Tubulin_CS (IPR017975) - T[141-147] .
SUPERFAMILY	Tub_FtsZ_C (IPR008280) - T[245-434] 1.07E-85
SMART	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[247-392] 1.1E-56
Pfam	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[262-390] 4.1E-50
Gene3D	Tubulin/FtsZ_C_sf (IPR037103) - T[268-382] 1.0E-65
Gene3D	Tubulin_C (IPR023123) - T[383-449] 4.6E-34

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score
TBA3C_HUMAN	96.119 %	868
TBA3D_HUMAN	96.119 %	868
TBA1C_HUMAN	93.289 %	867