Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R527.85723-87694.03192.t

Possible name(s)

TUBA1C; TUBA3C; TUBA3D

Gene model

Cisavi.CG.ENS81.R527.85723-87694

Location

R527 [85,854 / 87,694]

Sequences

Amino acid sequence

Length: 450

>Cisavi.CG.ENS81.R527.85723-87694.03192.p
MRECISIHVGQAGVQIGNACWELYCLEHGIQPDGQMPSDKTVGGGDDSFNTFFSETGAGK
HVPRAVFVDLEPTVVDEIRTGTYRQLFHPEQMITGKEDAANNYARGHYTIGKEIVDIVLD
RIRKLADQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAVYPAPVSTAV
VEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDVERPSYTNLNRLIGQIVSSITAS
LRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVGEITNACFEPANQ
MVKCDPRHGKYMACCMLYRGDVVPKDVNAAIASIKTKRTIQFVDWCPTGFKVGINYQPPT
VVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEA
REDLAALEKDYEEVGADSGDGEAEDEEDEY

Nucleotide sequence

Length: 1,401

>Cisavi.CG.ENS81.R527.85723-87694.03192.t
TTGCTGTCAAGTTTTTCTGAGCCGTTTTATTTTACAGAATTTATCAAAATGCGTGAATGT
ATCTCGATCCATGTTGGCCAAGCCGGTGTTCAGATTGGCAATGCTTGTTGGGAGCTTTAC
TGTCTTGAGCATGGAATCCAGCCTGATGGGCAAATGCCGAGTGACAAAACTGTTGGCGGA
GGCGACGATTCCTTTAATACGTTCTTCAGCGAGACTGGTGCAGGAAAGCATGTACCCAGA
GCGGTATTTGTAGACCTGGAGCCCACCGTTGTTGATGAAATCCGCACTGGTACATACCGA
CAACTATTTCACCCGGAACAAATGATTACCGGAAAAGAGGACGCCGCCAATAACTATGCC
CGAGGGCATTACACCATTGGAAAAGAGATTGTTGACATTGTCCTCGATCGTATCCGGAAG
CTTGCAGATCAATGCACCGGTTTGCAAGGTTTCTTGATTTTCCACTCCTTCGGAGGCGGA
ACTGGTTCCGGTTTTGCATCGCTCTTGATGGAGCGACTATCCGTAGATTACGGAAAGAAG
TCTAAATTGGAATTTGCAGTTTACCCTGCCCCCGTGTCGACGGCCGTCGTAGAGCCTTAC
AACTCGATCCTTACAACCCATACTACGCTAGAGCACTCAGACTGTGCATTTATGGTCGAC
AACGAGGCAATCTACGACATATGCCGTCGTAACCTGGACGTGGAACGTCCATCTTACACT
AATCTTAATCGATTGATTGGTCAGATTGTTTCTTCCATCACCGCTTCGCTGCGTTTCGAT
GGAGCTCTTAATGTCGACTTGACAGAATTCCAGACCAACTTAGTGCCGTACCCTCGCATT
CATTTTCCGTTGGTCACCTATGCCCCAGTGATATCGGCCGAAAAAGCTTACCACGAGCAG
CTGTCCGTTGGCGAAATTACCAACGCTTGCTTCGAACCTGCTAACCAGATGGTGAAATGC
GATCCTCGTCATGGGAAGTACATGGCTTGCTGTATGCTGTACCGTGGGGACGTTGTGCCG
AAGGACGTTAATGCGGCTATCGCTTCAATTAAAACCAAGCGAACTATCCAGTTCGTTGAT
TGGTGTCCGACTGGCTTCAAGGTTGGAATCAATTACCAGCCGCCAACCGTTGTACCCGGT
GGAGATTTGGCAAAAGTTCAACGAGCAGTTTGCATGTTGAGCAACACCACTGCAATCGCC
GAGGCGTGGGCACGTCTTGATCACAAGTTCGACCTGATGTATGCGAAGCGAGCATTTGTT
CACTGGTATGTTGGCGAGGGAATGGAAGAGGGCGAATTCTCCGAAGCTCGAGAGGATCTT
GCTGCTCTGGAAAAAGATTACGAGGAAGTTGGGGCGGACTCCGGAGATGGCGAGGCCGAA
GATGAGGAAGATGAATACTAA

InterProScan

Gene3D	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-267] 4.7E-131
SUPERFAMILY	Tubulin/FtsZ_GTPase_sf (IPR036525) - T[1-243] 1.7E-100
PANTHER	Tubulin (IPR000217) - T[2-446] 0.0
Pfam	Tubulin_FtsZ_GTPase (IPR003008) - T[3-212] 1.5E-68
PRINTS	Tubulin (IPR000217) - T[10-30] 5.6E-91 - T[53-72] 5.6E-91 - T[95-106] 5.6E-91 - T[108-132] 5.6E-91 - T[134-152] 5.6E-91 - T[153-174] 5.6E-91 - T[177-190] 5.6E-91 - T[191-211] 5.6E-91 - T[379-407] 5.6E-91
PRINTS	Alpha_tubulin (IPR002452) - T[18-33] 1.5E-119 - T[45-58] 1.5E-119 - T[88-101] 1.5E-119 - T[120-128] 1.5E-119 - T[148-160] 1.5E-119 - T[161-172] 1.5E-119 - T[213-225] 1.5E-119 - T[273-288] 1.5E-119 - T[320-341] 1.5E-119 - T[346-359] 1.5E-119 - T[359-378] 1.5E-119 - T[384-400] 1.5E-119 - T[421-437] 1.5E-119
SMART	Tubulin_FtsZ_GTPase (IPR003008) - T[49-245] 3.4E-83
ProSitePatterns	Tubulin_CS (IPR017975) - T[142-148] .
SUPERFAMILY	Tub_FtsZ_C (IPR008280) - T[245-435] 1.07E-86
SMART	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[247-392] 1.3E-58
Pfam	Tubulin/FtsZ_2-layer-sand-dom (IPR018316) - T[262-390] 4.2E-51
Gene3D	Tubulin/FtsZ_C_sf (IPR037103) - T[268-382] 3.5E-67
Gene3D	Tubulin_C (IPR023123) - T[383-449] 6.0E-34

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score
TBA3C_HUMAN	95.768 %	906
TBA3D_HUMAN	95.768 %	906
TBA1C_HUMAN	94.643 %	878