Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R4.856294-864945.13783.t

Possible name(s)

PAX3; PAX6; PAX7

Gene model

Cisavi.CG.ENS81.R4.856294-864945

Location

R4 [858,529 / 862,172]

Sequences

Amino acid sequence

Length: 232

>Cisavi.CG.ENS81.R4.856294-864945.13783.p
HNGARPCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRE
CPSIFAWEIRDRLLNEGTCNNDNIPSVSSINRVLRNLNGDQSNGFNERSVCEQKGVVINV
QRMDAPTKYLPRANCCRGPYGTQRYITTKVASHFPFDAAANSKINRVIMNQVGPRSIPAC
HRSIRSSRRPKTPSKFQTEENTKDGNSEARLQLKRKLQRNRTSFTQIQVEAL

Nucleotide sequence

Length: 696

>Cisavi.CG.ENS81.R4.856294-864945.13783.t
CACAATGGTGCGCGCCCTTGCGACATCTCGCGGATTCTTCAAGTATCTAACGGATGTGTC
AGTAAAATTCTTGCCAGGTACTACGAAACTGGAACCATTCGGCCCCGAGCAATTGGTGGC
AGCAAACCAAGAGTGGCCACCCCAGAAGTGGTCAACAAAATCGCATCCTACAAACGAGAA
TGCCCAAGCATATTTGCATGGGAAATAAGGGACAGACTACTGAACGAAGGAACCTGCAAT
AACGATAATATTCCAAGTGTTTCCTCGATTAACCGTGTTCTTCGAAATCTTAACGGCGAC
CAAAGCAACGGGTTCAATGAAAGAAGTGTTTGTGAACAAAAGGGCGTGGTCATTAACGTG
CAACGGATGGATGCCCCAACAAAGTATCTGCCAAGAGCAAATTGCTGCCGAGGGCCTTAT
GGGACTCAAAGGTATATCACGACCAAGGTTGCCTCGCATTTCCCTTTTGACGCTGCAGCT
AATTCCAAGATAAACCGAGTTATTATGAATCAAGTTGGACCGCGATCGATACCGGCGTGT
CATCGATCCATCCGCAGCTCCCGACGACCAAAAACTCCGTCGAAGTTTCAGACTGAGGAA
AACACAAAAGACGGAAACAGCGAAGCAAGACTTCAACTGAAGAGAAAACTGCAGAGAAAC
CGAACCTCATTCACCCAAATACAAGTGGAAGCTCTG

InterProScan

Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[1-39] 4.5E-19 - T[40-103] 2.3E-33
SUPERFAMILY	Homeobox-like_sf (IPR009057) - T[1-96] 5.02E-27
SMART	Paired_dom (IPR001523) - T[1-95] 3.9E-52
Pfam	Paired_dom (IPR001523) - T[1-95] 5.1E-51
ProSiteProfiles	Paired_dom (IPR001523) - T[1-97] 48.11
ProSitePatterns	Paired_dom (IPR001523) - T[5-21] .
PRINTS	Paired_dom (IPR001523) - T[13-30] 1.7E-18 - T[31-48] 1.7E-18

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PAX2_HUMAN	73.684 %	158	2.05E-46
PAX8_HUMAN	72.917 %	158	5.73E-46
PAX6_HUMAN	53.165 %	212	5.95E-67