Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R4.856294-864945.13781.t

Possible name(s)

PAX3; PAX6; PAX7

Gene model

Cisavi.CG.ENS81.R4.856294-864945

Location

R4 [858,069 / 864,945]

Sequences

Amino acid sequence

Length: 216

>Cisavi.CG.ENS81.R4.856294-864945.13781.p
MATYDSCRQASNMALCFNRESLPHKGHSGMNQLGGMFVNGRPLPDSIRQKIVEFAHNGAR
PCDISRILQVSNGCVSKILARYYETGTIRPRAIGGSKPRVATPEVVNKIASYKRECPSIF
AWEIRDRLLNEGTCNNDNIPSVYGNSEARLQLKRKLQRNRTSFTQIQVEALEKEFERTHY
PDVFARERLASKIDLPEARIQVWFSNRRAKWRREEK

Nucleotide sequence

Length: 723

>Cisavi.CG.ENS81.R4.856294-864945.13781.t
CTGGACAAATAAACCATTAAAAATATTCGGTTAAAAATTAGAAGCTTCGTTTTTTGAGTT
CAATAAAGATCTACTATGGCGACATACGATTCCTGCAGACAAGCAAGCAACATGGCACTT
TGCTTTAACCGGGAGAGTTTACCCCATAAAGGTCACAGTGGTATGAACCAACTCGGCGGT
ATGTTTGTTAACGGCCGACCTCTTCCAGACAGTATTCGGCAAAAAATTGTCGAATTTGCG
CACAATGGTGCGCGCCCTTGCGACATCTCGCGGATTCTTCAAGTATCTAACGGATGTGTC
AGTAAAATTCTTGCCAGGTACTACGAAACTGGAACCATTCGGCCCCGAGCAATTGGTGGC
AGCAAACCAAGAGTGGCCACCCCAGAAGTGGTCAACAAAATCGCATCCTACAAACGAGAA
TGCCCAAGCATATTTGCATGGGAAATAAGGGACAGACTACTGAACGAAGGAACCTGCAAT
AACGATAATATTCCAAGTGTATACGGAAACAGCGAAGCAAGACTTCAACTGAAGAGAAAA
CTGCAGAGAAACCGAACCTCATTCACCCAAATACAAGTGGAAGCTCTGGAAAAAGAGTTT
GAAAGAACGCATTACCCTGATGTGTTTGCCCGCGAACGACTTGCTTCGAAAATTGATTTG
CCAGAAGCAAGAATACAGGTCTGGTTCTCGAATAGGCGAGCAAAATGGCGCCGTGAAGAA
AAG

InterProScan

Gene3D	WH-like_DNA-bd_sf (IPR036388) - T[19-94] 9.4E-41 - T[95-143] 5.4E-27
Pfam	Paired_dom (IPR001523) - T[26-143] 7.0E-65
ProSiteProfiles	Paired_dom (IPR001523) - T[26-152] 57.695
SMART	Paired_dom (IPR001523) - T[26-152] 4.6E-79
SUPERFAMILY	Homeobox-like_sf (IPR009057) - T[28-135] 1.76E-35 - T[143-215] 1.41E-23
PRINTS	Paired_dom (IPR001523) - T[30-45] 5.4E-42 - T[48-66] 5.4E-42 - T[68-85] 5.4E-42 - T[86-103] 5.4E-42
ProSitePatterns	Paired_dom (IPR001523) - T[60-76] .
ProSiteProfiles	Homeobox_dom (IPR001356) - T[154-214] 19.742
SMART	Homeobox_dom (IPR001356) - T[156-216] 1.9E-20
CDD	Homeobox_dom (IPR001356) - T[158-215] 5.28783E-22
Pfam	Homeobox_dom (IPR001356) - T[158-213] 6.0E-22
ProSitePatterns	Homeobox_CS (IPR017970) - T[189-212] .

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
PAX7_HUMAN	51.24 %	236	1.43E-75
PAX6_HUMAN	89.655 %	228	2.41E-73
PAX4_HUMAN	52.212 %	229	7.49E-75