- Transcript 'Phmamm.CG.MTP2014.S8...' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.328435-339133.09807.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R48 [328,679 / 339,027]
Amino acid sequence
Length: 937
>Cisavi.CG.ENS81.R48.328435-339133.09807.p
IWNYKLRRCLFTLLGHLDYIRTAVFHHEYPWILSASDDQTIRIWNWQSRNCIAVLTGHNH
YKYLRRLDFTTSKDIPVMQLKSGSKTSVYALSYNAAENAVLVTSRASNIENSHYDLYQVP
KNVDSSNPDSPDSKRASGVTSIWVARNRFAVLDRTHTIVIKNLKNDIMKKIQVPRCEIFY
AGSGSLLMRNSDGISLYDVQQKRDLASVKITKVKYVVWSNDMTHVALLAKHNIAICNRKL
QSLSTIHENVRVKSGAWEESGVFIYTTSNHIKYALTNGDHGIIRTLDLPIYITRVRATNV
YCLDRETRPRVLAIDPTEFKFKMALVNRKYDEVLHMVRNSKLVGQSIIAYLQQKGYPEVA
LHFVKDDKTRFTLAVECGDIEVALAAAKALDDKQCWEALGEVALASGNHQVVEMAYQRTK
NFDKLSFLYLLTGNLEKLRKMMKIAEIRKDTSGHYQAALYLDVAERVKVLRGCGQKSLAY
LTAKTHGLDEEASQLEDEDSPSIPENAVLLQPPPPIQQCEENWPLLTVSKGFFQESRVGK
GGAVGGLAADVDLDVDDGGWGDDVDIILDEDGAIVDDEFQDADDGGAGEGGGWDVDDDDL
DLPADLDIAVDVGGDGEGYFVAPTKGTTQTQVWCNNSQLPVDHILAGSFDTAFRLLQDQV
GVVDFAPYKSIFMHTYSRSRTAYTALSGIPPMFATPHRNWREAGSKAGLPVVGLTLATLA
ARLQDAYKLTTQGKFDDAIVKFREILLSVPLLVVDNKQEISEAQQLISICREYVVGLSME
QERKQLPKSNLDEQKRICEMAAYLTHCQWQPVHLILALRTAQNLFFKLKNYKGAAIFARR
LLDLGPKPDVAMQTRKIIAACDKNPRDTHELRYDAHNPFDICAASYIPIYRGKPIEKCPL
SGACYDPTFKGETCRVTSCTEIGKSCMGLRVSSIQFR
Nucleotide sequence
Length: 3,041
>Cisavi.CG.ENS81.R48.328435-339133.09807.t
TGCTGACGAAGTTTGAAACAAAGTCTGCCCGTGTCAAAGGGCTATCTTTCCATCCGAAGA
GACCGTGGGTGTTGTCTTCACTCCACAATGGTTGCATTCAACTATGGGACTACAGAATGT
GCACATTGATCGATAAGTTTGAGGAACATGATGGTCCTGTTAGAGGTGTCTGCTTCCACA
ATCAACAACCATTGTTTGTCTCTGGTGGTGATGATTACAAAATCAAGATTTGGAACTATA
AACTACGAAGATGTTTATTCACCTTGCTTGGACATCTGGATTACATCAGGACAGCTGTGT
TCCATCATGAATATCCATGGATCCTAAGTGCCTCAGATGACCAGACCATCAGAATATGGA
ACTGGCAATCCCGGAATTGCATTGCGGTGCTTACCGGCCACAACCACTATAAATATCTTC
GGCGACTCGATTTTACCACCAGCAAAGATATACCTGTCATGCAGCTGAAAAGTGGTTCAA
AAACCAGCGTGTATGCTCTGTCCTACAACGCTGCTGAAAACGCAGTGCTGGTCACGTCCA
GAGCTTCTAACATTGAGAATTCTCACTACGACTTATACCAAGTACCCAAGAATGTGGATT
CTTCTAACCCTGACTCCCCAGACAGTAAGAGAGCATCAGGTGTGACATCAATTTGGGTGG
CCCGGAACCGCTTTGCCGTGCTTGACCGCACACACACCATTGTCATCAAGAATCTGAAGA
ACGACATCATGAAGAAGATTCAAGTGCCCAGATGTGAGATCTTCTATGCAGGAAGTGGCT
CCTTGCTGATGAGGAACTCAGACGGCATCTCATTATATGATGTGCAGCAGAAAAGGGATC
TGGCTTCAGTGAAGATCACTAAAGTGAAATACGTGGTTTGGTCGAACGATATGACGCATG
TGGCACTCCTCGCTAAGCACAACATCGCCATCTGCAACCGCAAGCTCCAATCACTCTCCA
CCATCCATGAGAATGTGCGAGTAAAGTCCGGAGCTTGGGAGGAGAGTGGAGTCTTCATCT
ACACCACGTCGAACCACATCAAATATGCTCTCACTAATGGTGATCATGGGATAATCCGCA
CCCTCGACCTTCCCATCTACATCACCCGCGTACGTGCCACCAATGTTTATTGCTTGGACC
GTGAAACTCGTCCAAGAGTGCTTGCCATCGACCCCACGGAATTCAAATTTAAGATGGCGC
TGGTAAATCGCAAATACGATGAGGTGCTTCACATGGTGAGGAACAGCAAGTTGGTCGGTC
AGTCCATCATTGCGTATCTGCAGCAGAAGGGTTACCCTGAGGTGGCACTGCACTTCGTGA
AAGATGACAAGACGAGATTTACTCTCGCTGTCGAGTGCGGTGATATTGAGGTTGCACTTG
CGGCAGCAAAAGCTCTCGACGACAAACAATGTTGGGAGGCACTTGGAGAAGTTGCTCTTG
CTAGTGGAAACCACCAAGTGGTGGAAATGGCGTACCAGCGAACAAAGAATTTCGACAAAT
TGTCTTTCCTCTATCTGCTTACTGGAAACTTGGAAAAACTGCGAAAAATGATGAAAATTG
CTGAGATCCGAAAAGACACATCGGGACACTATCAGGCTGCGCTCTATCTTGATGTTGCTG
AGCGAGTGAAAGTCCTTCGAGGATGCGGACAGAAGTCTCTCGCTTACCTCACAGCGAAGA
CCCATGGATTGGATGAAGAGGCAAGCCAACTTGAGGATGAAGACTCCCCATCTATCCCAG
AGAACGCGGTGCTCCTGCAACCTCCACCTCCCATTCAGCAGTGCGAGGAGAACTGGCCTC
TTCTCACCGTGAGCAAAGGATTCTTCCAGGAGTCGAGAGTGGGAAAGGGAGGAGCAGTTG
GAGGACTTGCAGCAGATGTTGATCTGGATGTGGATGATGGAGGGTGGGGAGATGATGTGG
ACATTATCCTCGATGAGGACGGTGCCATCGTGGATGACGAGTTCCAGGATGCTGATGACG
GTGGGGCTGGGGAAGGAGGAGGATGGGATGTTGATGATGATGATCTTGATCTTCCTGCCG
ATCTTGATATCGCTGTTGATGTGGGTGGGGATGGAGAGGGATATTTTGTAGCTCCAACCA
AAGGCACCACACAGACCCAAGTTTGGTGCAACAATTCCCAACTTCCTGTGGATCATATAT
TGGCTGGCTCATTCGATACTGCGTTCCGGTTGCTGCAAGACCAAGTTGGAGTGGTTGACT
TTGCACCTTATAAGTCCATCTTCATGCACACATATTCTCGATCACGCACGGCATACACTG
CTCTATCGGGGATTCCCCCAATGTTTGCTACCCCACACCGCAACTGGAGGGAAGCGGGGT
CCAAAGCTGGATTGCCGGTTGTGGGTCTCACCCTAGCTACGTTGGCGGCCCGTTTACAGG
ATGCATACAAACTTACCACACAAGGAAAGTTTGATGACGCGATTGTGAAATTCCGTGAAA
TCCTGCTTTCTGTTCCTCTGTTAGTGGTTGATAACAAACAAGAGATAAGTGAGGCACAAC
AGTTGATTAGCATTTGTCGGGAATATGTCGTCGGTCTCTCAATGGAACAAGAACGAAAAC
AACTCCCCAAATCGAACCTCGATGAGCAGAAGAGAATATGTGAAATGGCAGCCTACCTGA
CCCACTGTCAATGGCAACCTGTTCACCTCATACTTGCTCTAAGAACAGCACAAAACCTCT
TCTTTAAACTCAAGAATTACAAGGGAGCTGCTATATTTGCTCGTCGATTGCTTGATCTCG
GCCCCAAGCCCGATGTAGCCATGCAAACTCGCAAGATAATAGCTGCATGCGATAAAAACC
CCCGTGATACCCATGAGTTACGCTACGATGCCCACAACCCATTCGATATTTGTGCTGCTT
CATATATTCCAATCTATCGGGGAAAACCGATTGAGAAGTGCCCATTAAGTGGTGCATGCT
ACGATCCAACTTTTAAAGGTGAAACCTGCAGAGTGACCTCTTGTACCGAGATCGGCAAAA
GTTGCATGGGCCTGCGAGTCAGCTCTATACAATTCCGTTAA
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[1-107] 1.52E-16 - T[213-220] 1.52E-16 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-54] 14.503 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-120] 4.7E-22 |
| SMART |
WD40_repeat (IPR001680) - T[6-45] 4.8E-7 |
| Pfam |
WD40_repeat (IPR001680) - T[8-45] 2.7E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[13-54] 12.38 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[68-487] 2.5E-132 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[530-937] 3.8E-174 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 66.124 % | 1328 | 0 |