- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.328435-339133.09805.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R48 [328,463 / 339,046]
Amino acid sequence
Length: 1,192
>Cisavi.CG.ENS81.R48.328435-339133.09805.p
SQLNSRMLTKFETKSARVKGLSFHPKRPWVLSSLHNGCIQLWDYRMCTLIDKFEEHDGPV
RGVCFHNQQPLFVSGGDDYKIKIWNYKLRRCLFTLLGHLDYIRTAVFHHEYPWILSASDD
QTIRIWNWQSRNCIAVLTGHNHYVMSAHFHPTEDLIVSASLDQTARVWDISGLRKKNLSP
GGSSIEETIRGTPGAGSGGPSSIELFGSTDFMVKHVLEGHDRGVNWACFHPSLPVVVTAA
DDRLVKLWRMNESKAWEVDSCRGHYNNVACCVFHPRQDLIISASEDKSIRVWDMGKRTSI
NSFRREERFWILGCHPSLNLFAAGHDNGMVIFKLERERPAFATNANMLYYVKEKYLRRLD
FTTSKDIPVMQLKSGSKTSVYALSYNAAENAVLVTSRASNIENSHYDLYQVPKNVDSSNP
DYSKRASGVTSIWVARNRFAVLDRTHTIVIKNLKNDIRRFKCPDVDEIFYAGSGSLLMRN
SDGISLYDVQQKRDLASVKITKVKYVVWSNDMTHVALLAKHNIAICNRKLQSLSTIHENV
RVKSGAWEESGVFIYTTSNHIKYALTNGDHGIIRTLDLPIYITRVRATNVYCLDRETRPR
VLAIDPTEFKFKMALVNRKYDEVLHMVRNSKLVGQSIIAYLQQKGYPEVALHFVKDDKTR
FTLAVECGDIEVALAAAKALDDKQCWEALGEVALASGNHQVVEMAYQRTKNFDKLSFLYL
LTGNLEKLRKMMKIAEIRKDTSGHYQAALYLDVAERVKVLRGCGQKSLAYLTAKTHGLDE
EASQLEDEDSPSIPENAVLLQPPPPIQQCEENWPLLTVSKGKFNLAVETVKSQALSRVGK
GGAVGGLAADVDLDVDDGGWGDDVDIILDEDGAIVDDEFQDADDGTTQTQVWCNNSQLPV
DHILAGSFDTAFRLLQDQVGVVDFAPYKSIFMHTYSRSRTAYTALSGIPPMFATPHRNWR
EAGSKAGLPVVGLTLATLAARLQDAYKLTTQGKFDDAIVKFREILLSVPLLVVDNKQEIS
EAQQLISICREYVVGLSMEQERKQLPKSNLDEQKRICEMAAYLTHCQWQPVHLILALRTA
QNLFFKLKNYKGAAIFARRLLDLGPKPDVAMQTRKIIAACDKNPRDTHELRYDAHNPFDI
CAASYIPIYRGKPIEKCPLSGACYDPTFKGETCRVTSCTEIGKSCMGLRVSS
Nucleotide sequence
Length: 3,807
>Cisavi.CG.ENS81.R48.328435-339133.09805.t
TCACAATTGAACAGCAGAATGCTGACGAAGTTTGAAACAAAGTCTGCCCGTGTCAAAGGG
CTATCTTTCCATCCGAAGAGACCGTGGGTGTTGTCTTCACTCCACAATGGTTGCATTCAA
CTATGGGACTACAGAATGTGCACATTGATCGATAAGTTTGAGGAACATGATGGTCCTGTT
AGAGGTGTCTGCTTCCACAATCAACAACCATTGTTTGTCTCTGGTGGTGATGATTACAAA
ATCAAGATTTGGAACTATAAACTACGAAGATGTTTATTCACCTTGCTTGGACATCTGGAT
TACATCAGGACAGCTGTGTTCCATCATGAATATCCATGGATCCTAAGTGCCTCAGATGAC
CAGACCATCAGAATATGGAACTGGCAATCCCGGAATTGCATTGCGGTGCTTACCGGCCAC
AACCACTATGTGATGTCTGCACATTTCCACCCAACTGAGGATCTCATTGTGTCCGCTTCT
CTTGACCAAACCGCAAGAGTGTGGGACATTTCAGGATTACGCAAGAAGAACTTATCACCG
GGTGGCAGCAGCATAGAGGAGACAATTCGGGGAACCCCTGGTGCTGGTAGTGGGGGTCCA
AGTTCTATCGAGTTGTTTGGAAGCACAGACTTTATGGTCAAACATGTTTTAGAGGGTCAC
GACCGTGGTGTGAACTGGGCTTGCTTCCATCCAAGCTTGCCTGTCGTCGTTACTGCTGCC
GACGATCGTCTTGTCAAGTTATGGAGGATGAATGAGTCGAAAGCTTGGGAGGTGGACTCG
TGCAGGGGCCACTACAACAATGTGGCTTGCTGTGTCTTTCATCCCCGCCAGGATCTTATC
ATTAGCGCTTCGGAGGATAAATCGATCCGGGTGTGGGATATGGGAAAGAGGACCAGCATA
AACTCTTTCAGAAGGGAGGAGAGGTTCTGGATCTTGGGTTGCCACCCAAGTTTAAACTTA
TTTGCTGCTGGCCATGATAATGGGATGGTGATTTTTAAACTGGAGAGGGAGCGTCCAGCT
TTCGCCACCAATGCCAACATGCTGTATTATGTAAAAGAGAAATATCTTCGGCGACTCGAT
TTTACCACCAGCAAAGATATACCTGTCATGCAGCTGAAAAGTGGTTCAAAAACCAGCGTG
TATGCTCTGTCCTACAACGCTGCTGAAAACGCAGTGCTGGTCACGTCCAGAGCTTCTAAC
ATTGAGAATTCTCACTACGACTTATACCAAGTACCCAAGAATGTGGATTCTTCTAACCCT
GACTACAGTAAGAGAGCATCAGGTGTGACATCAATTTGGGTGGCCCGGAACCGCTTTGCC
GTGCTTGACCGCACACACACCATTGTCATCAAGAATCTGAAGAACGACATCAGAAGATTC
AAGTGCCCAGATGTGGATGAGATCTTCTATGCAGGAAGTGGCTCCTTGCTGATGAGGAAC
TCAGACGGCATCTCATTATATGATGTGCAGCAGAAAAGGGATCTGGCTTCAGTGAAGATC
ACTAAAGTGAAATACGTGGTTTGGTCGAACGATATGACGCATGTGGCACTCCTCGCTAAG
CACAACATCGCCATCTGCAACCGCAAGCTCCAATCACTCTCCACCATCCATGAGAATGTG
CGAGTAAAGTCCGGAGCTTGGGAGGAGAGTGGAGTCTTCATCTACACCACGTCGAACCAC
ATCAAATATGCTCTCACTAATGGTGATCATGGGATAATCCGCACCCTCGACCTTCCCATC
TACATCACCCGCGTACGTGCCACCAATGTTTATTGCTTGGACCGTGAAACTCGTCCAAGA
GTGCTTGCCATCGACCCCACGGAATTCAAATTTAAGATGGCGCTGGTAAATCGCAAATAC
GATGAGGTGCTTCACATGGTGAGGAACAGCAAGTTGGTCGGTCAGTCCATCATTGCGTAT
CTGCAGCAGAAGGGTTACCCTGAGGTGGCACTGCACTTCGTGAAAGATGACAAGACGAGA
TTTACTCTCGCTGTCGAGTGCGGTGATATTGAGGTTGCACTTGCGGCAGCAAAAGCTCTC
GACGACAAACAATGTTGGGAGGCACTTGGAGAAGTTGCTCTTGCTAGTGGAAACCACCAA
GTGGTGGAAATGGCGTACCAGCGAACAAAGAATTTCGACAAATTGTCTTTCCTCTATCTG
CTTACTGGAAACTTGGAAAAACTGCGAAAAATGATGAAAATTGCTGAGATCCGAAAAGAC
ACATCGGGACACTATCAGGCTGCGCTCTATCTTGATGTTGCTGAGCGAGTGAAAGTCCTT
CGAGGATGCGGACAGAAGTCTCTCGCTTACCTCACAGCGAAGACCCATGGATTGGATGAA
GAGGCAAGCCAACTTGAGGATGAAGACTCCCCATCTATCCCAGAGAACGCGGTGCTCCTG
CAACCTCCACCTCCCATTCAGCAGTGCGAGGAGAACTGGCCTCTTCTCACCGTGAGCAAA
GGTAAGTTCAACCTTGCAGTGGAAACAGTAAAATCACAGGCCTTATCGAGAGTGGGAAAG
GGAGGAGCAGTTGGAGGACTTGCAGCAGATGTTGATCTGGATGTGGATGATGGAGGGTGG
GGAGATGATGTGGACATTATCCTCGATGAGGACGGTGCCATCGTGGATGACGAGTTCCAG
GATGCTGATGACGGCACCACACAGACCCAAGTTTGGTGCAACAATTCCCAACTTCCTGTG
GATCATATATTGGCTGGCTCATTCGATACTGCGTTCCGGTTGCTGCAAGACCAAGTTGGA
GTGGTTGACTTTGCACCTTATAAGTCCATCTTCATGCACACATATTCTCGATCACGCACG
GCATACACTGCTCTATCGGGGATTCCCCCAATGTTTGCTACCCCACACCGCAACTGGAGG
GAAGCGGGGTCCAAAGCTGGATTGCCGGTTGTGGGTCTCACCCTAGCTACGTTGGCGGCC
CGTTTACAGGATGCATACAAACTTACCACACAAGGAAAGTTTGATGACGCGATTGTGAAA
TTCCGTGAAATCCTGCTTTCTGTTCCTCTGTTAGTGGTTGATAACAAACAAGAGATAAGT
GAGGCACAACAGTTGATTAGCATTTGTCGGGAATATGTCGTCGGTCTCTCAATGGAACAA
GAACGAAAACAACTCCCCAAATCGAACCTCGATGAGCAGAAGAGAATATGTGAAATGGCA
GCCTACCTGACCCACTGTCAATGGCAACCTGTTCACCTCATACTTGCTCTAAGAACAGCA
CAAAACCTCTTCTTTAAACTCAAGAATTACAAGGGAGCTGCTATATTTGCTCGTCGATTG
CTTGATCTCGGCCCCAAGCCCGATGTAGCCATGCAAACTCGCAAGATAATAGCTGCATGC
GATAAAAACCCCCGTGATACCCATGAGTTACGCTACGATGCCCACAACCCATTCGATATT
TGTGCTGCTTCATATATTCCAATCTATCGGGGAAAACCGATTGAGAAGTGCCCATTAAGT
GGTGCATGCTACGATCCAACTTTTAAAGGTGAAACCTGCAGAGTGACCTCTTGTACCGAG
ATCGGCAAAAGTTGCATGGGCCTGCGAGTCAGCTCTATACAATTCCGTTAATGCCATTGT
ATTTGTTTAAGATCGTATCTATGTACAGAGCAGAACTATACTTACGTCGTGCACTCAAGC
CAAGTTATTATACTTGAAGTGCAATTAGTTCGACAGCACTGGACCATTAAACCATATGGT
TAAAGAAAATAGACAAATGATTACCCGTTTATGAACCCTATTTGATATGGTGACATGCTT
GTATGGATTGTGCTATTAGTGTCAATA
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-174] 7.33E-71 - T[213-331] 7.33E-71 |
| SMART |
WD40_repeat (IPR001680) - T[4-43] 0.072 - T[46-85] 3.7E-7 - T[88-127] 4.8E-7 - T[130-169] 6.4E-10 - T[210-249] 2.2E-5 - T[254-293] 1.5E-7 |
| PIRSF |
Coatomer_asu (IPR016391) - T[5-1192] 0.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[5-335] 2.0E-124 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[11-302] 48.248 |
| Pfam |
WD40_repeat (IPR001680) - T[16-43] 0.18 - T[50-85] 1.1E-5 - T[90-127] 3.6E-7 - T[132-169] 9.6E-6 - T[215-248] 0.0026 - T[258-293] 7.6E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[53-94] 12.547 - T[95-136] 12.38 - T[137-171] 14.418 - T[217-258] 11.712 - T[261-302] 14.418 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[114-128] 5.6E-7 - T[156-170] 5.6E-7 - T[280-294] 5.6E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[156-170] . - T[280-294] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[358-777] 7.6E-133 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[856-1191] 6.3E-153 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 70.403 % | 1833 | 0 |
| COPB2_HUMAN | 25.969 % | 254 | 2.24E-70 |
| LIS1_HUMAN | 26.689 % | 114 | 6.43E-27 |