- Transcript 'Haaura.CG.MTP2014.S4...' >
- Transcript 'Cisavi.CG.ENS81.R65....' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.328435-339133.09804.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R48 [328,434 / 339,028]
Amino acid sequence
Length: 1,227
>Cisavi.CG.ENS81.R48.328435-339133.09804.p
MLTKFETKSARVKGLSFHPKRPWVLSSLHNGCIQLWDYRMCTLIDKFEEHDGPVRGVCFH
NQQPLFVSGGDDYKIKIWNYKLRRCLFTLLGHLDYIRTAVFHHEYPWILSASDDQTIRIW
NWQSRNCIAVLTGHNHYVMSAHFHPTEDLIVSASLDQTARVWDISGLRKKNLSPGGSSIE
ETIRGTPGAGSGGPSSIELFGSTDFMVKHVLEGHDRGVNWACFHPSLPVVVTAADDRLVK
LWRMNESKAWEVDSCRGHYNNVACCVFHPRQDLIISASEDKSIRVWDMGKRTSINSFRRE
ERFWILGCHPSLNLFAAGHDNGMVIFKLERERPAFATNANMLYYVKEKYLRRLDFTTSKD
IPVMQLKSGSKTSVYALSYNAAENAVLVTSRASNIENSHYDLYQVPKNVDSSNPDSPDSK
RASGVTSIWVARNRFAVLDRTHTIVIKNLKNDIMKKIQIFYAGSGSLLMRNSDGISLYDV
QQKRDLASVKITKVKYVVWSNDMTHVALLAKHNIAICNRKLQSLSTIHENVRVKSGAWEE
SGVFIYTTSNHIKYALTNGDHGIIRTLDLPIYITRVRATNVYCLDRETRPRVLAIDPTEF
KFKMALVNRKYDEVLHMVRNSKLVGQSIIAYLQQKGYPEVALHFVKDDKTRFTLAVECGD
IEVALAAAKALDDKQCWEALGEVALASGNHQVVEMAYQRTKNFDKLSFLYLLTGNLEKLR
KMMKIAEIRKDTSGHYQAALYLDVAERVKVLRGCGQKSLAYLTAKTHGLDEEASQLEDED
SPSIPENAVLLQPPPPIQQCEENWPLLTVSKGKFNLAVETSRVGKGGAVGGLAADVDLDV
DDGGWGDDVDIILDEDGAIVDDEFQDADDGADFRSGAGEGGGWDVDDDDLDLPADLDIAV
DVGGDGEGYFVAPTKGTTQTQVWCNNSQLPVDHILAGSFDTAFRLLQDQVGVVDFAPYKS
IFMHTYSRSRTAYTALSGIPPMFATPHRNWREAGSKAGLPVVGLTLATLAARLQDAYKLT
TQGKFDDAIVKFREILLSVPLLVVDNKQEISEAQQLISICREYVVGLSMEQERKQLPKSN
LDEQKRICEMAAYLTHCQWQPVHLILALRTAQNLFFKLKNYKGAAIFARRLLDLGPKPDV
AMQTRKIIAACDKNPRDTHELRYDAHNPFDICAASYIPIYRGKPIEKCPLSGACYDPTFK
GETCRVTSCTEIGKSCMGLRVSSIQFR
Nucleotide sequence
Length: 3,929
>Cisavi.CG.ENS81.R48.328435-339133.09804.t
ATGCTGACGAAGTTTGAAACAAAGTCTGCCCGTGTCAAAGGGCTATCTTTCCATCCGAAG
AGACCGTGGGTGTTGTCTTCACTCCACAATGGTTGCATTCAACTATGGGACTACAGAATG
TGCACATTGATCGATAAGTTTGAGGAACATGATGGTCCTGTTAGAGGTGTCTGCTTCCAC
AATCAACAACCATTGTTTGTCTCTGGTGGTGATGATTACAAAATCAAGATTTGGAACTAT
AAACTACGAAGATGTTTATTCACCTTGCTTGGACATCTGGATTACATCAGGACAGCTGTG
TTCCATCATGAATATCCATGGATCCTAAGTGCCTCAGATGACCAGACCATCAGAATATGG
AACTGGCAATCCCGGAATTGCATTGCGGTGCTTACCGGCCACAACCACTATGTGATGTCT
GCACATTTCCACCCAACTGAGGATCTCATTGTGTCCGCTTCTCTTGACCAAACCGCAAGA
GTGTGGGACATTTCAGGATTACGCAAGAAGAACTTATCACCGGGTGGCAGCAGCATAGAG
GAGACAATTCGGGGAACCCCTGGTGCTGGTAGTGGGGGTCCAAGTTCTATCGAGTTGTTT
GGAAGCACAGACTTTATGGTCAAACATGTTTTAGAGGGTCACGACCGTGGTGTGAACTGG
GCTTGCTTCCATCCAAGCTTGCCTGTCGTCGTTACTGCTGCCGACGATCGTCTTGTCAAG
TTATGGAGGATGAATGAGTCGAAAGCTTGGGAGGTGGACTCGTGCAGGGGCCACTACAAC
AATGTGGCTTGCTGTGTCTTTCATCCCCGCCAGGATCTTATCATTAGCGCTTCGGAGGAT
AAATCGATCCGGGTGTGGGATATGGGAAAGAGGACCAGCATAAACTCTTTCAGAAGGGAG
GAGAGGTTCTGGATCTTGGGTTGCCACCCAAGTTTAAACTTATTTGCTGCTGGCCATGAT
AATGGGATGGTGATTTTTAAACTGGAGAGGGAGCGTCCAGCTTTCGCCACCAATGCCAAC
ATGCTGTATTATGTAAAAGAGAAATATCTTCGGCGACTCGATTTTACCACCAGCAAAGAT
ATACCTGTCATGCAGCTGAAAAGTGGTTCAAAAACCAGCGTGTATGCTCTGTCCTACAAC
GCTGCTGAAAACGCAGTGCTGGTCACGTCCAGAGCTTCTAACATTGAGAATTCTCACTAC
GACTTATACCAAGTACCCAAGAATGTGGATTCTTCTAACCCTGACTCCCCAGACAGTAAG
AGAGCATCAGGTGTGACATCAATTTGGGTGGCCCGGAACCGCTTTGCCGTGCTTGACCGC
ACACACACCATTGTCATCAAGAATCTGAAGAACGACATCATGAAGAAGATTCAAATCTTC
TATGCAGGAAGTGGCTCCTTGCTGATGAGGAACTCAGACGGCATCTCATTATATGATGTG
CAGCAGAAAAGGGATCTGGCTTCAGTGAAGATCACTAAAGTGAAATACGTGGTTTGGTCG
AACGATATGACGCATGTGGCACTCCTCGCTAAGCACAACATCGCCATCTGCAACCGCAAG
CTCCAATCACTCTCCACCATCCATGAGAATGTGCGAGTAAAGTCCGGAGCTTGGGAGGAG
AGTGGAGTCTTCATCTACACCACGTCGAACCACATCAAATATGCTCTCACTAATGGTGAT
CATGGGATAATCCGCACCCTCGACCTTCCCATCTACATCACCCGCGTACGTGCCACCAAT
GTTTATTGCTTGGACCGTGAAACTCGTCCAAGAGTGCTTGCCATCGACCCCACGGAATTC
AAATTTAAGATGGCGCTGGTAAATCGCAAATACGATGAGGTGCTTCACATGGTGAGGAAC
AGCAAGTTGGTCGGTCAGTCCATCATTGCGTATCTGCAGCAGAAGGGTTACCCTGAGGTG
GCACTGCACTTCGTGAAAGATGACAAGACGAGATTTACTCTCGCTGTCGAGTGCGGTGAT
ATTGAGGTTGCACTTGCGGCAGCAAAAGCTCTCGACGACAAACAATGTTGGGAGGCACTT
GGAGAAGTTGCTCTTGCTAGTGGAAACCACCAAGTGGTGGAAATGGCGTACCAGCGAACA
AAGAATTTCGACAAATTGTCTTTCCTCTATCTGCTTACTGGAAACTTGGAAAAACTGCGA
AAAATGATGAAAATTGCTGAGATCCGAAAAGACACATCGGGACACTATCAGGCTGCGCTC
TATCTTGATGTTGCTGAGCGAGTGAAAGTCCTTCGAGGATGCGGACAGAAGTCTCTCGCT
TACCTCACAGCGAAGACCCATGGATTGGATGAAGAGGCAAGCCAACTTGAGGATGAAGAC
TCCCCATCTATCCCAGAGAACGCGGTGCTCCTGCAACCTCCACCTCCCATTCAGCAGTGC
GAGGAGAACTGGCCTCTTCTCACCGTGAGCAAAGGTAAGTTCAACCTTGCAGTGGAAACA
TCGAGAGTGGGAAAGGGAGGAGCAGTTGGAGGACTTGCAGCAGATGTTGATCTGGATGTG
GATGATGGAGGGTGGGGAGATGATGTGGACATTATCCTCGATGAGGACGGTGCCATCGTG
GATGACGAGTTCCAGGATGCTGATGACGGTGCGGATTTCAGGAGTGGGGCTGGGGAAGGA
GGAGGATGGGATGTTGATGATGATGATCTTGATCTTCCTGCCGATCTTGATATCGCTGTT
GATGTGGGTGGGGATGGAGAGGGATATTTTGTAGCTCCAACCAAAGGCACCACACAGACC
CAAGTTTGGTGCAACAATTCCCAACTTCCTGTGGATCATATATTGGCTGGCTCATTCGAT
ACTGCGTTCCGGTTGCTGCAAGACCAAGTTGGAGTGGTTGACTTTGCACCTTATAAGTCC
ATCTTCATGCACACATATTCTCGATCACGCACGGCATACACTGCTCTATCGGGGATTCCC
CCAATGTTTGCTACCCCACACCGCAACTGGAGGGAAGCGGGGTCCAAAGCTGGATTGCCG
GTTGTGGGTCTCACCCTAGCTACGTTGGCGGCCCGTTTACAGGATGCATACAAACTTACC
ACACAAGGAAAGTTTGATGACGCGATTGTGAAATTCCGTGAAATCCTGCTTTCTGTTCCT
CTGTTAGTGGTTGATAACAAACAAGAGATAAGTGAGGCACAACAGTTGATTAGCATTTGT
CGGGAATATGTCGTCGGTCTCTCAATGGAACAAGAACGAAAACAACTCCCCAAATCGAAC
CTCGATGAGCAGAAGAGAATATGTGAAATGGCAGCCTACCTGACCCACTGTCAATGGCAA
CCTGTTCACCTCATACTTGCTCTAAGAACAGCACAAAACCTCTTCTTTAAACTCAAGAAT
TACAAGGGAGCTGCTATATTTGCTCGTCGATTGCTTGATCTCGGCCCCAAGCCCGATGTA
GCCATGCAAACTCGCAAGATAATAGCTGCATGCGATAAAAACCCCCGTGATACCCATGAG
TTACGCTACGATGCCCACAACCCATTCGATATTTGTGCTGCTTCATATATTCCAATCTAT
CGGGGAAAACCGATTGAGAAGTGCCCATTAAGTGGTGCATGCTACGATCCAACTTTTAAA
GGTGAAACCTGCAGAGTGACCTCTTGTACCGAGATCGGCAAAAGTTGCATGGGCCTGCGA
GTCAGCTCTATACAATTCCGTTAATGCCATTGTATTTGTTTAAGATCGTATCTATGTACA
GAGCAGAACTATACTTACGTCGTGCACTCAAGCCAAGTTATTATACTTGAAGTGCAATTA
GTTCGACAGCACTGGACCATTAAACCATATGGTTAAAGAAAATAGACAAATGATTACCCG
TTTATGAACCCTATTTGATATGGTGACATGCTTGTATGGATTGTGCTATTAGTGTCAATA
TTATGAAATAAATAACCTATCAGAAAATA
| PIRSF |
Coatomer_asu (IPR016391) - T[1-1223] 0.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-329] 2.8E-124 |
| SMART |
WD40_repeat (IPR001680) - T[2-37] 5.1 - T[40-79] 3.7E-7 - T[82-121] 4.8E-7 - T[124-163] 6.4E-10 - T[204-243] 2.2E-5 - T[248-287] 1.5E-7 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[5-168] 2.07E-70 - T[207-325] 2.07E-70 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[5-296] 48.248 |
| Pfam |
WD40_repeat (IPR001680) - T[12-37] 0.23 - T[44-79] 1.1E-5 - T[84-121] 3.7E-7 - T[126-163] 9.9E-6 - T[209-242] 0.0027 - T[252-287] 7.8E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[47-88] 12.547 - T[89-130] 12.38 - T[131-165] 14.418 - T[211-252] 11.712 - T[255-296] 14.418 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[108-122] 6.0E-7 - T[150-164] 6.0E-7 - T[274-288] 6.0E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[150-164] . - T[274-288] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[352-768] 2.3E-129 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[818-1227] 3.6E-173 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 72.151 % | 1900 | 0 |
| COPB2_HUMAN | 26.065 % | 248 | 3.08E-68 |
| LIS1_HUMAN | 26.689 % | 114 | 7.76E-27 |