- Clone 'cign011c07' >
- Clone 'cien202420' >
- Transcript 'Cisavi.CG.ENS81.R48....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R48.2937282-2942241.18998.t
Possible name(s)
POC1A; TBL1XR1; THOC3
Gene model
Location
R48 [2,937,281 / 2,942,241]
Amino acid sequence
Length: 316
>Cisavi.CG.ENS81.R48.2937282-2942241.18998.p
MSVAQLQQHFKQNSKSKEYSAHTSKVHSVAWNKDGRKLASGSYDQTAAVFILDRDKLTKD
LTCKGHSDSVDQLCWSPSNSEVFATASGDKTVRIWDARSGKSTSTINTKGENINICWSPN
GSCIAVGNKEDLVTFIDTKTFKARNHEQFKVEVNEITWNNTNDLFFLTTGLGTIQIHSYP
DMKMIQSLYGHTANCICIKFDPSGKYFATGSADAVVNLWDTNELVCVRTLSRLDWPVRTL
GFSHNGQLLASASEDLFIDISCVKTGEKICEVPCDSPTFTLAWHPKLKLLAYACDDKDKY
NRDAGSVRLFGLPNES
Nucleotide sequence
Length: 1,297
>Cisavi.CG.ENS81.R48.2937282-2942241.18998.t
CACGAGGTTTTGTTAAAAAATATCGATGTCAGTCGCTCAATTGCAACAGCACTTTAAGCA
AAACAGTAAGTCTAAAGAATACTCGGCCCACACCTCCAAAGTACACTCTGTTGCATGGAA
TAAAGATGGGCGAAAATTAGCATCGGGATCTTACGACCAAACTGCCGCAGTATTCATTTT
AGACCGGGATAAGCTGACAAAAGACCTAACCTGCAAGGGACACAGCGATAGCGTTGATCA
ACTTTGTTGGAGTCCTAGTAACTCAGAAGTGTTTGCAACTGCCTCTGGTGATAAAACTGT
CAGGATTTGGGATGCAAGAAGTGGAAAATCAACTTCCACTATAAATACCAAAGGTGAAAA
CATCAATATTTGCTGGAGCCCAAATGGAAGTTGCATCGCTGTAGGGAACAAAGAGGACCT
GGTGACTTTCATCGACACCAAGACGTTTAAAGCGAGAAACCATGAACAATTTAAAGTCGA
GGTGAATGAGATAACTTGGAACAACACAAATGATTTATTTTTTCTCACAACCGGGTTGGG
AACGATACAAATACACAGTTACCCAGATATGAAAATGATCCAATCGTTATATGGGCACAC
AGCAAACTGCATTTGCATCAAATTTGACCCAAGTGGGAAATATTTCGCCACTGGGAGCGC
TGATGCTGTGGTCAATTTGTGGGATACAAATGAGCTGGTTTGTGTGAGAACGTTATCCAG
ACTTGATTGGCCAGTCCGAACGCTGGGTTTCAGCCACAACGGTCAACTCTTGGCATCTGC
GTCGGAAGATTTGTTCATTGACATCTCGTGCGTGAAAACGGGAGAAAAGATTTGTGAGGT
ACCGTGCGATTCGCCGACCTTCACCCTAGCATGGCACCCCAAGCTCAAGCTGCTAGCTTA
CGCGTGCGACGATAAGGATAAGTACAACCGCGACGCCGGTTCCGTCAGACTCTTCGGTTT
GCCCAACGAATCGTGACGTAATGGTGGTGACGTCACAACACGATGACGTACCAACGATGC
TCCCCTCATCTGCTGGCAGGACGACAGCATACTGTATTGGGTCCGCCGATTTCTAAGTGA
AATCCAACCGCTCGATAATGTAACTTTTTTCGAACTGCAAACAGTTTTACCGCTACGCAT
TCTTCTATTAAAACAAGCAAATTATGATCAAACGTCGGTTTATATGTGGCTTGTAATTTC
CCCACCATAGCACCTCACGCAAGTCGTTGGGAATATAATACCCTGTCCTGTAGTGAACAC
ATTCCCGAAAATGACCTGAATAATACATGCATATCTG
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[5-146] 6.6E-32 - T[147-304] 1.6E-27 |
| SMART |
WD40_repeat (IPR001680) - T[12-53] 2.0E-5 - T[56-96] 3.0E-9 - T[99-137] 15.0 - T[181-220] 9.5E-9 - T[223-262] 3.5 - T[265-311] 140.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[14-297] 4.71E-58 |
| Pfam |
WD40_repeat (IPR001680) - T[16-46] 1.1E-4 - T[62-96] 3.5E-6 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[19-271] 26.92 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[19-60] 10.709 - T[63-105] 15.488 - T[188-229] 14.352 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[38-52] 4.2E-5 - T[83-97] 4.2E-5 - T[207-221] 4.2E-5 |
| Pfam |
TIF_beta_prop-like (IPR013979) - T[103-212] 1.3E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1A_HUMAN | 26.724 % | 90.9 | 1.56E-20 |
| TBL1R_HUMAN | 27.143 % | 88.6 | 1.64E-19 |
| THOC3_HUMAN | 66.246 % | 452 | 4.44E-161 |