- Transcript 'Cisavi.CG.ENS81.R435...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R435.235416-244353.07673.t
Possible name(s)
TRIM2; TRIM3; TRIM71
Gene model
Location
R435 [236,456 / 244,338]
Amino acid sequence
Length: 720
>Cisavi.CG.ENS81.R435.235416-244353.07673.p
MASSIDLLTKINDEFLTCQICFETYTRPKSLNCQHTFCLKCLEEYTPPNSVSVMCPTCRS
EQPLTEDGINGLKDNFFISSMSDMLKTVKEIRSEDKDGTSLLETSSIALCCSGIHDGEAA
KIYCQSCQCPICHECVESGHSRHRRCSLKEEVLNQSHQIENLLKTAKGKADVLRTLQKSL
KDIKQSKKRDRDNGEAEIERICEIFISTIHRRKQELTDELHNMHAAEVKRINADEDSVEM
QLSSLVSCTEFSRKVLEYGTPKEVLGLNNQMTQILHQLLETHPATTYHNTDQTDNIQFDT
NADASVRVIRDNLGRLTIQKATFDESINKVGWGDVINVGKLYTWFVLKELDSFCVSDNHS
LARRNGRTILQRVESTETKLVVQVYQWEWAPMSTSIRVYTGKVGGSPLTLLMAINIMDII
STQVIVPSVVKTTDVRFSKVKTINIWSRFMLLIGKQGIGDGEFESTPNLAVNSVNEIITS
DYDGAKIQIFDPQGNFKDSFFVYNPQVNKRMCKPAGIAILDNDDIVVCCEDQVHIWTHEG
KSVLGFGKGQFGNCSSICVNSENRIVVADVGKHCISVFTDTGKLLLQFGAQGKGESKLVE
PRYVACDSQNNIIVSDGGDCSVKKFSSQGEFLLSFGAEGPERGQFQGPRGICTDENDNIL
VADCWNHRVDIFTPDGCFMRHIATGADSLHFPWCISLTTNGKLVLSEDYSWSVKVFTLPG
Nucleotide sequence
Length: 2,160
>Cisavi.CG.ENS81.R435.235416-244353.07673.t
ATGGCGAGTTCGATTGATCTGCTGACGAAGATCAACGATGAGTTCCTCACATGTCAGATA
TGCTTCGAGACCTACACGCGACCGAAGAGTCTCAACTGCCAGCACACCTTCTGCCTGAAG
TGTCTTGAGGAGTACACTCCGCCCAACAGTGTGAGCGTGATGTGCCCGACGTGCCGCAGC
GAGCAACCACTCACGGAAGACGGAATCAACGGATTGAAGGACAACTTCTTCATCTCAAGC
ATGTCCGACATGTTGAAAACCGTCAAGGAGATTCGTAGCGAGGATAAAGACGGAACTTCG
CTGCTCGAAACTTCTTCCATAGCATTGTGTTGTAGTGGTATCCACGACGGAGAGGCTGCC
AAGATCTACTGCCAGTCCTGCCAATGTCCGATCTGCCACGAATGTGTGGAGAGCGGCCAT
TCAAGACACAGGCGATGCTCGCTCAAAGAAGAAGTCCTCAACCAAAGTCACCAGATCGAG
AACCTTCTAAAGACTGCGAAGGGGAAGGCGGACGTGCTGCGAACGCTGCAGAAGTCGTTG
AAAGATATAAAACAGAGCAAGAAAAGAGATCGGGACAACGGGGAAGCTGAGATCGAGAGG
ATTTGCGAGATCTTTATCAGCACGATACACAGGCGGAAACAAGAGTTGACGGACGAATTG
CACAACATGCACGCGGCCGAGGTGAAACGAATCAACGCGGATGAAGACTCGGTCGAAATG
CAGCTCAGCTCGCTGGTATCTTGCACCGAATTCTCACGCAAGGTTCTGGAATATGGCACG
CCGAAGGAGGTCCTGGGACTCAACAACCAAATGACACAAATCCTCCATCAGTTACTAGAG
ACTCACCCCGCTACCACCTACCATAACACCGACCAAACTGATAACATTCAGTTCGACACT
AACGCAGATGCGAGTGTTAGAGTGATCCGAGATAATCTTGGAAGGTTGACCATACAGAAG
GCAACATTTGACGAGAGCATAAACAAAGTAGGTTGGGGTGATGTTATTAACGTGGGGAAA
TTGTATACATGGTTCGTTCTAAAAGAGTTGGATTCATTCTGCGTGTCCGACAATCACAGT
TTGGCACGACGGAACGGTAGAACCATCCTACAGAGAGTCGAATCGACGGAAACCAAACTT
GTTGTTCAGGTATATCAGTGGGAGTGGGCGCCAATGTCAACTTCGATTCGCGTTTATACT
GGGAAAGTGGGGGGTTCGCCATTGACCTTGTTGATGGCAATTAACATAATGGATATCATC
TCGACACAGGTCATTGTCCCAAGCGTTGTGAAAACAACCGATGTGCGGTTTTCGAAGGTT
AAAACAATAAATATCTGGTCAAGGTTTATGTTGCTAATCGGGAAACAAGGGATTGGAGAT
GGCGAGTTCGAATCCACCCCGAACCTCGCCGTCAACTCTGTCAACGAAATTATAACGTCG
GATTATGATGGAGCGAAGATTCAGATATTCGACCCGCAGGGAAACTTCAAAGACTCGTTT
TTTGTTTATAATCCCCAGGTAAACAAGAGAATGTGCAAGCCGGCTGGGATCGCGATTCTA
GATAATGATGATATAGTGGTGTGCTGCGAGGACCAGGTACATATATGGACGCACGAAGGC
AAGAGCGTTCTGGGCTTCGGGAAAGGTCAATTCGGCAATTGCTCGAGCATCTGCGTCAAC
AGTGAGAATCGCATTGTGGTGGCCGACGTCGGGAAACACTGTATTTCGGTGTTCACCGAC
ACTGGGAAACTGCTCCTGCAATTCGGGGCGCAAGGAAAGGGCGAAAGCAAGCTGGTTGAA
CCCCGTTACGTGGCGTGCGACTCGCAGAATAATATTATTGTGTCGGACGGTGGCGACTGC
AGTGTGAAAAAGTTCTCTTCGCAAGGCGAATTTTTGCTGAGTTTCGGGGCTGAAGGGCCG
GAACGGGGTCAGTTCCAGGGTCCACGGGGAATTTGCACAGATGAGAATGATAACATACTG
GTCGCTGACTGCTGGAACCATAGAGTTGACATATTCACGCCGGACGGCTGCTTTATGAGG
CATATTGCCACTGGAGCAGACAGTCTACACTTCCCGTGGTGCATTTCTCTCACCACCAAT
GGCAAACTGGTGTTGTCGGAGGATTATAGCTGGTCGGTCAAAGTATTCACTCTTCCAGGT
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[7-95] 1.8E-16 |
| SMART |
Znf_RING (IPR001841) - T[18-58] 3.4E-7 |
| Pfam |
Znf-RING_LisH (IPR027370) - T[18-56] 1.6E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[18-59] 13.138 |
| ProSitePatterns |
Znf_RING_CS (IPR017907) - T[33-42] . |
| ProSiteProfiles |
Znf_B-box (IPR000315) - T[105-148] 10.296 |
| SMART |
Znf_B-box (IPR000315) - T[106-148] 0.0084 |
| Pfam |
Znf_B-box (IPR000315) - T[112-148] 1.8E-6 |
| CDD |
Znf_B-box (IPR000315) - T[114-148] 1.56707E-8 |
| Gene3D |
6-blade_b-propeller_TolB-like (IPR011042) - T[441-636] 1.0E-42 - T[637-720] 1.3E-19 |
| ProSiteProfiles |
NHL_repeat_subgr (IPR013017) - T[469-493] 6.99 - T[538-581] 11.39 - T[585-628] 10.835 - T[632-675] 15.07 - T[676-719] 5.161 |
| Pfam |
NHL_repeat (IPR001258) - T[551-578] 7.1E-6 - T[645-672] 4.8E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LIN41_HUMAN | 29.71 % | 119 | 8.67E-28 |
| TRIM2_HUMAN | 28.743 % | 308 | 2.35E-94 |
| TRIM3_HUMAN | 27.297 % | 290 | 2.9E-87 |