- Transcript 'Haaura.CG.MTP2014.S1...' >
- Transcript 'Moocci.CG.ELv1_2.S63...' >
- Transcript 'Phmamm.CG.MTP2014.S5...' >
- Transcript 'Cisavi.CG.ENS81.R41....' >
- Transcript 'Cisavi.CG.ENS81.R41....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R41.491637-511410.06061.t
Possible name(s)
ITGA3; ITGA6; ITGA7
Gene model
Location
R41 [491,900 / 511,410]
Amino acid sequence
Length: 1,086
>Cisavi.CG.ENS81.R41.491637-511410.06061.p
MDSIILLLIGTLCSSTYGYNLEGRLPLFKRGLDPHSTFGFSVALHKLAVDPGNGLEKSLL
VVGSPTAGSITSQTNAVKPGGIYHCPVTTNSEDCTRVKMDLGESTKLNNKTGQWLGVSLK
SQGPGKYLITCAHRHSVRLYTKVHEVEQLCGKCFLLNGKIDVSPLFKYLLLKVILGELLK
VEKSENCKDGTSCTFVGDGEYLMGGPGMWAWTGGMFDVEMADLEATEALDLFTSSTAIIP
LRRDSYLGFSVASSKTLIPDQTTYIAGAPRGNYTGSVVLYQKVAVQLSKSLIPMVADTLM
GEFIGSSFGFSVEATDLNGDGVDDLLVGAPQYYEYSNEGKHGGAVYVYISQAGKKLSQTQ
PQKLTGKLDSFFGYSISPLGDIDQDGFGDFAVGAPHEKPHGKVYIFRGSADGAVKESQVF
DGSNFTDITTDIKGFGVSLSGVVDIDNNKYPDLLVGTLSDFVVLLRSRPIITVESRLETS
VSSLDLKLPSCSSGTKTYSCFEVTFCFRYNARHLEYTEELAIHYTVVLDSDLQKERKAAR
VGFVSPQGPSLLVDTGNIPRSGEWFCPGNLYQVFFLDLEDRLRPIKIDLEFDLAMGMNGV
KREKPDFPVFNMIDDPIMDADYPHKRSTVVGLANTCGDDGCQSNLRVRGRKYQIPQNPLS
FYINPIYVRLDSSLVRGRDGKLLLTLNVTNDGEEAHQAVVSAKLPQRVYYDNYTIVASSG
ADIVCTTSDKGSDFFARFIRFLLIGYSFFKLNRKTETNCEMALQKTNLTGSTTSINPVIP
ITPLYSRVVIEMALSLSGYGKPQQVRYGNAPIKGESAMHYTNQIGPFVEYTFTVKNEGIH
LATGIRLEVDFPIEINNGKWLLYLVSAHVRSGGLQVVGECDGVHLNPLQIKLPITSVLSE
ARRSKREVRASSLYEPRRLSSVSTSGSNFVKLDCGSGTAHCVQVGCTLEPIQPLSTTSVY
LQARLWNNTFLEEFTDIDLVNVAALGRLLNEASNVRITGNSTQHEVETTVDHAFFEVAVE
SVFPWWYILIGIIIALLIYIIIIFLLIKCGFFKRNRYPRQRQDAQVDNGVVAEEDKAADG
ERETAT
Nucleotide sequence
Length: 3,647
>Cisavi.CG.ENS81.R41.491637-511410.06061.t
ATGGATTCAATAATTTTATTACTTATTGGGACACTATGCAGTTCAACTTATGGATATAAT
CTTGAAGGAAGGCTACCTCTATTTAAAAGGGGATTGGACCCACACAGTACGTTTGGATTC
AGTGTCGCGCTGCACAAACTCGCAGTAGATCCAGGAAATGGATTGGAGAAGAGCTTACTA
GTGGTTGGAAGCCCAACAGCAGGTTCAATTACATCGCAAACAAACGCAGTGAAACCTGGC
GGGATATATCACTGCCCGGTTACAACTAACTCGGAGGATTGCACCCGTGTTAAGATGGAC
TTAGGCGAATCTACCAAATTAAACAATAAAACCGGACAATGGCTAGGAGTAAGTCTCAAA
AGTCAAGGTCCAGGGAAGTACCTAATAACGTGCGCGCATAGACATTCGGTGAGATTGTAC
ACAAAAGTTCACGAAGTTGAACAGCTTTGTGGGAAATGTTTCCTATTGAATGGTAAGATT
GATGTTAGTCCCTTATTTAAGTACCTATTGTTAAAAGTTATTCTTGGGGAACTGCTTAAG
GTGGAAAAAAGTGAAAATTGTAAGGATGGCACAAGTTGCACGTTTGTGGGTGATGGAGAG
TATTTGATGGGTGGGCCGGGTATGTGGGCTTGGACTGGGGGGATGTTCGACGTAGAGATG
GCTGACTTGGAGGCAACTGAGGCGTTGGATCTGTTCACGTCATCCACCGCGATCATTCCA
CTGAGGAGAGATAGTTACCTCGGGTTCTCGGTAGCTTCAAGCAAGACGTTGATTCCCGAT
CAAACCACCTACATCGCTGGTGCCCCTAGGGGGAATTACACTGGGTCCGTCGTGCTCTAC
CAAAAAGTTGCTGTGCAATTATCGAAAAGCCTTATCCCAATGGTGGCCGACACACTTATG
GGGGAATTTATCGGGTCGAGTTTCGGTTTCTCGGTGGAAGCCACTGATCTAAACGGAGAT
GGGGTCGATGACCTGCTTGTCGGAGCTCCTCAGTATTACGAATATTCCAACGAAGGGAAG
CACGGAGGGGCTGTCTACGTCTACATCAGTCAAGCTGGCAAAAAGCTCAGTCAAACGCAG
CCACAAAAGCTAACAGGGAAATTGGATTCATTTTTCGGGTATTCCATCTCCCCCCTCGGA
GACATTGACCAGGATGGGTTTGGTGACTTCGCAGTCGGTGCACCTCATGAAAAACCGCAC
GGAAAAGTTTACATTTTCCGAGGGTCCGCTGATGGGGCTGTCAAAGAGTCCCAAGTATTC
GACGGGTCCAATTTCACCGATATCACAACTGACATCAAAGGGTTTGGGGTCTCTCTCTCA
GGGGTGGTGGACATCGACAACAACAAGTACCCCGACTTGTTGGTCGGAACATTGTCAGAT
TTCGTTGTGTTGTTGCGATCAAGACCGATTATCACCGTTGAGTCACGACTTGAAACAAGT
GTCTCAAGTTTGGATCTGAAGTTACCCAGCTGTTCATCTGGTACAAAGACCTATTCATGC
TTTGAAGTGACGTTCTGTTTCAGATACAACGCGCGCCACCTAGAGTACACAGAGGAACTC
GCCATCCACTACACGGTGGTGCTAGACAGCGATTTGCAGAAGGAAAGAAAAGCTGCCCGA
GTTGGATTCGTTTCCCCCCAAGGACCCAGCTTGTTGGTTGACACTGGAAACATTCCCAGA
TCAGGAGAATGGTTTTGCCCGGGAAACTTGTATCAAGTCTTTTTCCTGGACCTGGAAGAT
CGATTGCGACCGATTAAGATTGATCTTGAATTCGACCTCGCGATGGGCATGAACGGGGTG
AAACGGGAGAAGCCGGATTTCCCGGTTTTCAACATGATTGACGACCCCATCATGGACGCC
GATTACCCCCACAAGAGGTCGACAGTGGTGGGGCTCGCCAACACATGTGGGGACGACGGT
TGTCAGAGCAACCTACGTGTCCGTGGAAGAAAATATCAAATTCCCCAAAATCCCCTCTCT
TTCTATATTAATCCCATTTATGTCCGACTGGATAGCTCATTGGTAAGAGGAAGAGACGGG
AAACTTCTTCTCACACTCAATGTAACGAATGATGGGGAGGAAGCTCATCAAGCCGTCGTT
TCTGCCAAGCTCCCGCAGAGAGTTTACTACGACAATTACACCATTGTTGCATCATCAGGG
GCGGATATCGTCTGCACAACTTCGGATAAAGGTTCGGATTTTTTCGCTCGTTTCATACGA
TTTCTATTAATTGGGTATTCATTTTTTAAATTAAATAGAAAAACAGAAACAAATTGTGAA
ATGGCGCTACAGAAAACAAATTTGACCGGGTCTACCACGAGCATCAACCCCGTCATACCC
ATCACCCCACTCTACTCGAGGGTCGTCATTGAGATGGCTTTGTCGCTGTCGGGGTACGGG
AAGCCCCAACAGGTTCGCTATGGCAACGCTCCGATCAAAGGAGAATCAGCGATGCATTAC
ACCAATCAGATCGGTCCATTTGTCGAGTATACGTTCACGGTGAAAAATGAAGGGATCCAT
CTGGCAACTGGGATTCGTTTGGAGGTGGATTTCCCTATTGAGATCAACAATGGAAAATGG
TTGTTGTACCTGGTATCGGCCCACGTACGCTCTGGGGGGCTGCAGGTGGTGGGGGAGTGT
GACGGCGTTCATCTGAACCCCCTTCAGATCAAGTTGCCGATAACATCGGTGTTAAGTGAA
GCCCGGAGGTCAAAACGAGAGGTTCGAGCTTCAAGTTTATACGAACCACGAAGATTATCA
TCGGTGTCGACCAGCGGATCGAATTTCGTGAAACTTGACTGTGGGTCGGGCACTGCGCAT
TGCGTGCAAGTCGGATGTACGCTGGAACCCATCCAACCACTTTCCACGACCTCAGTCTAT
CTCCAGGCGCGCTTGTGGAACAATACTTTTCTTGAGGAGTTTACAGACATCGATTTGGTG
AACGTTGCGGCGTTGGGCCGTCTATTGAACGAAGCCAGTAACGTCAGAATAACTGGAAAC
TCCACACAACATGAGGTAGAAACGACGGTCGATCACGCGTTTTTCGAGGTCGCTGTTGAA
TCAGTGTTCCCGTGGTGGTACATTCTTATCGGGATAATTATCGCGCTGCTTATTTACATC
ATCATTATATTTCTGCTCATCAAATGCGGGTTTTTCAAGCGAAACCGATACCCGAGACAA
CGCCAGGATGCGCAGGTTGACAACGGAGTCGTTGCCGAGGAAGACAAGGCAGCCGACGGG
GAAAGAGAAACCGCCACGTGATCGGCTTTTAAGCAATCCGCTTCGCGCCATTAATAACGG
AATGTCGGAATGCCTCTCTCGCCTTCGACATCATTTTTCACGAGACGCAACTTTTCGCAA
TTTTTGGTGCGTTGGCGCCCTCCAGCGGATGGGAGCCCGAATAACAACTCCCATAATTCA
CACCCGGTCGGTACATGTTCCTTGCAATTATTGTTTTTACGAGCATTTCATCGTGTCTTG
CATGCTTTCAAAGCCTCCCTTGTATCTTTGTGTCGCTGGGTAACCCCTCCAGGAACCGCA
GTGTTTAATGTGGACCGGCACTTATTCGTAGGGGGAGTCCCCTTAGTACAACTAACCACG
CGTTTTACGTACACAAGGTAATTTCTTGTGCATAAAATGGCAGTATA
| Gene3D |
Integrin_alpha_N (IPR028994) - T[19-470] 1.3E-112 |
| ProSiteProfiles |
Int_alpha_beta-p (IPR013519) - T[24-94] 9.568 - T[100-165] 6.701 - T[233-289] 6.965 - T[295-357] 13.419 - T[358-415] 12.42 - T[421-482] 9.126 |
| SMART |
Int_alpha_beta-p (IPR013519) - T[34-101] 2.0 - T[243-298] 0.14 - T[304-363] 1.0E-13 - T[368-422] 1.2E-15 - T[431-489] 31.0 |
| PRINTS |
Integrin_alpha (IPR000413) - T[244-256] 3.4E-53 - T[301-321] 3.4E-53 - T[371-395] 3.4E-53 - T[435-456] 3.4E-53 - T[461-480] 3.4E-53 - T[580-593] 3.4E-53 - T[1035-1054] 3.4E-53 |
| Pfam |
FG-GAP (IPR013517) - T[308-348] 9.7E-12 - T[372-406] 1.6E-7 |
| Pfam |
Integrin_alpha-2 (IPR013649) - T[467-946] 4.6E-62 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[469-638] 9.42E-17 - T[638-731] 5.18E-9 - T[790-1028] 1.41E-37 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITA7_HUMAN | 31.32 % | 442 | 1.15E-136 |
| ITA6_HUMAN | 31.565 % | 462 | 1.21E-144 |
| ITA3_HUMAN | 29.725 % | 352 | 1.32E-104 |