- Transcript 'Cisavi.CG.ENS81.R41....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R41.2655032-2666782.15108.t
Possible name(s)
PRDM10; PRDM15; PRDM4
Gene model
Location
R41 [2,655,031 / 2,666,782]
Amino acid sequence
Length: 509
>Cisavi.CG.ENS81.R41.2655032-2666782.15108.p
MLLLFQMEGGNLVIVEEDYSDDEEEVYSIKDKKYRSKARATLPDVLAIAQVDNFSCGVIA
KSRIRPRTQFGPLDAPLTSESLSSFPLKPRPMAMPDIGEGTKTELYFDTRSENLCNWMSL
VRPADNYEEQNLVAQFVKQAVYFTTIRKIEAQEELKVWYAPKYAKFMNKPLLAPVPSQDA
DLVSLRGRKLFKPTYFADTFRDEEDEVDVRSVPPKKRNWGRNNRVFVKDNVGSTNLEPVR
NLSQDNQVLQQSDLPEHATAPPDVLDTAIELIMEVEGEKSTKPTTFSNRPVCCYCGKSFG
RKHTLKLHLASHFPPSFLCHACGRAFIRKDKLQEHIKRMHSGGRTGALAKAKKTKPQAKR
FQPLIPPTECHKFHYKCVHCMVGFQRRGMLVNHLLKRHPEVNMDNVPELNLPIMKKTVSY
VCPYCKKSYQSITKRRDHVLKHHPGQQVPPGLREVKRAACPTSIGDPAVRKSPTTPMDPV
ICPYCPSQYSSHAKMVNHLSLKHTDKMAD
Nucleotide sequence
Length: 1,585
>Cisavi.CG.ENS81.R41.2655032-2666782.15108.t
ACTAAAAATGATTTAGAAGAACTAAACTATTTGGAATAAAAAAAAATAGATCTTCCAATG
CTCCTACTATTCCAGATGGAGGGAGGAAACCTGGTAATTGTGGAAGAGGATTACTCTGAT
GATGAAGAGGAGGTTTACTCAATCAAAGATAAGAAGTACAGGAGCAAAGCTAGAGCCACG
CTACCTGATGTGTTGGCTATTGCCCAGGTGGACAACTTTTCATGTGGGGTCATAGCAAAG
TCTCGAATCCGGCCGCGTACGCAGTTTGGACCACTAGATGCCCCTCTTACTTCGGAATCA
CTTTCTTCCTTCCCGCTTAAACCAAGGCCAATGGCAATGCCAGACATAGGAGAAGGCACA
AAAACAGAGCTATACTTTGACACACGGAGTGAGAACTTGTGCAATTGGATGAGTCTAGTA
CGACCTGCAGATAATTACGAGGAGCAAAATTTAGTCGCTCAGTTTGTGAAGCAAGCAGTG
TATTTCACCACCATTCGGAAGATTGAGGCTCAAGAGGAATTAAAGGTATGGTACGCGCCG
AAATATGCTAAGTTTATGAACAAGCCTTTGCTAGCTCCAGTGCCAAGTCAAGACGCCGAT
CTCGTTAGTTTAAGGGGGCGCAAGCTGTTCAAACCCACGTACTTTGCTGATACATTCCGT
GATGAAGAGGATGAGGTCGATGTGAGGAGCGTTCCTCCCAAGAAGAGGAACTGGGGGAGA
AACAACCGGGTTTTCGTTAAGGATAATGTTGGTTCAACTAACCTGGAGCCTGTAAGGAAT
CTTTCACAAGACAATCAAGTTCTGCAACAGTCTGACTTGCCGGAGCATGCTACTGCTCCT
CCTGATGTCCTTGACACTGCTATCGAGCTAATTATGGAGGTGGAGGGTGAAAAAAGCACT
AAACCGACGACATTTAGCAACCGCCCTGTTTGTTGTTATTGTGGAAAGTCATTTGGCCGC
AAGCACACACTGAAGCTCCACCTCGCCTCACACTTCCCACCTTCCTTTCTATGCCATGCA
TGCGGTCGAGCGTTCATCCGCAAGGACAAGCTACAGGAGCACATCAAACGAATGCACAGC
GGAGGGCGCACTGGAGCGCTTGCCAAAGCAAAGAAGACCAAGCCTCAAGCCAAAAGATTT
CAACCCCTAATCCCACCAACGGAATGCCACAAGTTCCACTACAAATGCGTTCACTGCATG
GTTGGCTTTCAGCGACGAGGAATGCTGGTCAATCACCTCCTCAAGCGACATCCGGAGGTC
AACATGGATAATGTACCAGAGCTTAACCTACCAATTATGAAGAAAACTGTGAGCTATGTT
TGTCCGTACTGTAAGAAGTCCTACCAGTCTATCACAAAACGCAGGGATCACGTGTTAAAG
CACCACCCCGGTCAGCAAGTTCCCCCAGGTCTCAGGGAAGTGAAGAGAGCCGCCTGCCCC
ACATCCATAGGCGATCCGGCTGTTCGGAAATCCCCCACAACCCCAATGGACCCAGTAATA
TGTCCCTACTGCCCGTCCCAGTATTCAAGCCACGCCAAGATGGTAAACCACCTGTCACTC
AAACACACAGACAAAATGGCCGACT
| ProSiteProfiles |
SET_dom (IPR001214) - T[44-160] 10.101 |
| SMART |
Znf_C2H2_type (IPR013087) - T[290-312] 0.4 - T[317-340] 0.011 - T[375-398] 0.58 - T[420-442] 0.064 - T[480-503] 0.47 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[290-312] 9.224 - T[317-345] 13.484 - T[420-448] 8.58 |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[291-337] 5.61E-7 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[319-340] . - T[377-398] . - T[422-443] . - T[482-503] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PRD10_HUMAN | 44.749 % | 189 | 1.31E-51 |
| PRD15_HUMAN | 41.727 % | 100 | 3.3E-22 |
