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TRANSCRIPT CARD

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  1. Transcript 'Haaura.CG.MTP2014.S7...' > 
  2. Region 'REG00000654' > 
  3. Molecular Tool 'Hr-macho-1 mRNA (Kumano 2010)' > 
  4. EST 'BW323469' > 
  5. Transcript 'Cisavi.CG.ENS81.R401...'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R401.114744-119324.00505.t

Possible name(s)

GJC1; GJC2; GJD3

Gene model

Cisavi.CG.ENS81.R401.114744-119324

Location

R401 [114,743 / 119,294]

Sequences

Amino acid sequence

Length: 266

>Cisavi.CG.ENS81.R401.114744-119324.00505.p
QMAWHIIHSLLEQVRLHSTFPGKLWIIMMFIFRIVVVARIGDMVYHDEQSHFVCNTLSPG
CSNVCFNAFSPISQLRFWSLMVLVVSTPGILFCIYASHKIYHAYVKSWDATSEIDRGLDH
PRPMANGKRRRGDAPPSYGSHPSAPPLYVVKRLNSKKDEPLDKNGKPDLSRRMKDYDAPL
RKRHRRPYWWHVVIRTILEVGFLVGQYYLYGWFVPELFECARWPCPKTVDCFVSRPMEKT
CLLWLMFGLGAIACVLSIGEFWALGW

Nucleotide sequence

Length: 1,530

>Cisavi.CG.ENS81.R401.114744-119324.00505.t
CAAATGGCGTGGCATATAATACACAGCCTTCTCGAGCAAGTTCGTCTCCATTCCACGTTC
CCAGGGAAGCTATGGATCATAATGATGTTCATATTCCGTATTGTGGTGGTTGCGAGGATA
GGGGACATGGTATACCACGATGAACAGTCGCATTTTGTTTGCAACACCTTATCCCCGGGG
TGTTCCAATGTATGTTTCAACGCATTCAGCCCGATTTCCCAACTCCGCTTCTGGTCGCTT
ATGGTGCTGGTCGTGTCCACCCCTGGAATACTTTTCTGCATCTACGCAAGCCACAAGATC
TACCACGCTTACGTCAAATCGTGGGATGCGACATCCGAAATTGATCGGGGATTGGATCAC
CCCCGTCCCATGGCGAACGGGAAGCGTCGAAGAGGGGACGCTCCTCCTTCGTACGGTTCC
CACCCATCCGCCCCACCCCTCTACGTTGTAAAGCGTCTCAACTCGAAAAAGGACGAACCG
CTCGACAAAAACGGAAAACCCGATCTTTCGCGTCGGATGAAAGATTATGACGCGCCACTT
CGGAAACGTCATCGTCGCCCTTATTGGTGGCACGTGGTGATTCGGACGATTCTAGAGGTT
GGATTTCTGGTGGGCCAGTACTACTTGTACGGTTGGTTCGTGCCTGAGTTGTTTGAATGC
GCAAGGTGGCCGTGCCCGAAAACTGTGGATTGCTTCGTATCACGACCTATGGAGAAGACG
TGTCTTCTGTGGCTCATGTTTGGCCTTGGTGCTATCGCTTGCGTGTTGAGCATTGGGGAG
TTCTGGGCGCTCGGGTGGGAACGCTTCAAGTACGCCATGTGCTGCCGAGGCCCCAAGGTT
ACGTACGAGGAGAAGCGGAGACGATTGGCTGCGCTCCAAGCGGCCGCACACAACCCCCCC
AAGCAGCGTCGAAGGAAACAAGGACGAGATAATTGTTATGCATGGCGGAGGTGGACTCAC
CGGGGCTTTGAGTATAGACAGCCTCAGCAGCGACACCACTGTCGAGAGTGTGTGACGTCA
TTTGACGTCATCAAGATTCGTGACGTCATAGAAGAAGTGACTGTATTCACGTAGTAGAGT
GCAACGCGCACGCCGTTCCAGTGGCAAAGCCTATCCGATCAATTTCTTCAATCTACTGTC
TTCAAACATTTCGCCAAGTTTCGTCTAAATTGGCGATCGCGACTTAAATCGCCAGTTTTT
TAACCCGAATGGACGGTGACGCACAGCATAAGCAGCTTGTCACAAGCGCTGATAAAACAA
ATTTATTTATCACACGATAATGAATATAAGTTGCAATGTTGCAACATATATTCGTTTGAT
CCATCCACACATATTGTCCATGATATCTATGTTCCCAACCGCGCCCACAGAGCCCGAAAA
TGGAGGCGGGTAAACCGCTTTTAGTGCCAAGCACACTTGCTTTAGAATAGACCGCTTTAA
AGACATCATTTCACCATTTAACCTCCACATAATTGTAAAATAGTTCGGCCCCATAATCTA
AGTCACTGTGAAAATTGGATTGTACATTTT

InterProScan

Gene3D
Connexin_N_sf (IPR038359) - T[2-134] 1.1E-38 - T[140-266] 2.2E-31
PANTHER
Connexin (IPR000500) - T[2-266] 1.0E-110
Pfam
Connexin_N (IPR013092) - T[4-266] 9.7E-81
PRINTS
Connexin (IPR000500) - T[21-45] 4.0E-43 - T[52-74] 4.0E-43 - T[77-97] 4.0E-43 - T[184-210] 4.0E-43 - T[220-240] 4.0E-43 - T[241-264] 4.0E-43
SMART
Connexin_N (IPR013092) - T[43-76] 1.4E-11
SMART
Connexin_CCC (IPR019570) - T[198-264] 2.6E-36
ProSitePatterns
Connexin_CS (IPR017990) - T[220-236] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
CXG1_HUMAN 37.736 % 199 1.17E-61
CXA8_HUMAN 33.582 % 176 2.38E-52
CXD2_HUMAN 37.681 % 177 3.78E-54