Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R35.1259150-1265019.12416.t

Possible name(s)

COL12A1; TNC; TNR

Gene model

Cisavi.CG.ENS81.R35.1259150-1265019

Location

R35 [1,259,149 / 1,265,019]

Sequences

Amino acid sequence

Length: 271

>Cisavi.CG.ENS81.R35.1259150-1265019.12416.p
MDRIVCIVVCSLCIVSTVESQGLNRPLIPAPENVRVDQNSVSHTSVWLTWDLVAKADSYT
VTLRPISLTASGIGSGIREKFTIIRGLLPNTDYEFTIRAVKGDNVGVPAVITQRTALPAA
RNLQINSTTVTATSMTVTWSAIQDVEYYKVAVDPPIGVIGTGSRTYTTSITLRGMSANTL
YNIIIIPFNYVGDGARATVSHYTKMRPPTRLVVNLATVTSSTIGFQWQQVDGTHGYQLRV
SPSVPGLDLNQLILETEFVLRRLSPDVLYLI

Nucleotide sequence

Length: 831

>Cisavi.CG.ENS81.R35.1259150-1265019.12416.t
TAATTTGGTCGTTTTACCATGGATAGGATCGTGTGTATTGTAGTGTGTTCTCTGTGTATT
GTTTCTACAGTGGAATCGCAAGGTCTAAACCGACCACTAATTCCAGCCCCCGAAAACGTC
CGGGTTGATCAGAACTCCGTGTCTCACACTTCAGTTTGGTTGACTTGGGACCTTGTAGCA
AAAGCTGACAGCTACACTGTTACGCTCCGACCGATCAGTTTAACTGCAAGCGGAATTGGT
TCCGGAATTCGCGAGAAGTTCACGATTATCAGAGGACTTCTTCCGAATACTGATTATGAA
TTCACAATCCGAGCAGTGAAAGGAGATAATGTGGGAGTTCCAGCTGTTATTACACAACGG
ACAGCTCTACCTGCGGCCCGGAATCTGCAAATCAATTCGACAACCGTCACCGCCACGTCA
ATGACTGTCACCTGGTCGGCCATACAAGATGTTGAATACTACAAAGTTGCCGTGGATCCA
CCAATAGGGGTGATTGGAACAGGATCGCGTACTTACACCACGTCCATAACTCTACGCGGG
ATGTCAGCCAACACTCTCTACAACATCATTATCATTCCCTTCAATTATGTAGGGGACGGG
GCTCGAGCTACCGTGTCACATTACACCAAAATGAGACCTCCTACCCGCCTTGTTGTCAAC
CTGGCCACCGTGACATCATCAACTATTGGTTTCCAATGGCAACAAGTGGACGGTACCCAC
GGCTACCAACTACGTGTCAGTCCATCTGTTCCTGGCCTTGATCTCAATCAACTCATCCTG
GAGACTGAATTTGTGCTCAGGCGACTGTCCCCAGACGTTCTTTATTTAATC

InterProScan

Gene3D	Ig-like_fold (IPR013783) - T[25-117] 2.3E-13 - T[118-210] 7.1E-9
SMART	FN3_dom (IPR003961) - T[28-106] 3.6E-7 - T[117-194] 6.9E-4
Pfam	FN3_dom (IPR003961) - T[29-106] 3.9E-8
CDD	FN3_dom (IPR003961) - T[29-113] 1.03767E-7 - T[118-203] 1.19363E-4
ProSiteProfiles	FN3_dom (IPR003961) - T[30-119] 14.691 - T[121-208] 9.649
SUPERFAMILY	FN3_sf (IPR036116) - T[30-141] 1.78E-12 - T[126-270] 6.9E-11

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value