Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R3.1408790-1416382.09416.t

Possible name(s)

PTCD3

Gene model

Cisavi.CG.ENS81.R3.1408790-1416382

Location

R3 [1,408,789 / 1,416,382]

Sequences

Amino acid sequence

Length: 502

>Cisavi.CG.ENS81.R3.1408790-1416382.09416.p
MEESKEPDKKAKTEEPFYPDCVDSLEKLIENVKVEEAGAMYLRLHSTKVEVPSSILNQLL
GLLAFSRCSSEELKGLAQRPSLVLPTVRRYPKDIQLLIDVFKTIETPTADHHSIMIRAYV
SSGASKEAIDLYNNIVSKNLAVDVDTFNHVLHALAFLTSNPRVKLDVLYYMRKHNVQPNH
ATFANLITALRYHKDETSLVRQWSKVVNEMMALKMEPGLSIYITMMTAVEKTRLPPKTKQ
NLHHFILDAIEGKSFKVVSDLDYFAPTVLSNLVKNDLELSKKAFRLMNKAPNSKLFVNWK
MQSIFLSKILDVVVNQDRIENSWELISSVSYTHAISINMYNSRLIKAAVRDERPEYIPIF
CALRVGFERFEHMASCLSAAIKLFPHADKDTVTQFKNMTEYCLNKAMTCKKQEIFNAIIN
HCIQLAALSADVTVLLNTVQMVLQKHRSAVIRVESVTMCEDFATTVGNAGLIKRVQLLRE
MFESQEKVPEDNNRKLNEKRKK

Nucleotide sequence

Length: 1,683

>Cisavi.CG.ENS81.R3.1408790-1416382.09416.t
CACGGCAAAGCAGCCGCAGAATATGTGATCAGAAATCACACAAACTACTTCCAAGACGAC
TGGGAATCAGAAAACATAGAAACATGGCTAAAAAACTTCGACGAAAATCTACCTGGAATG
GAAGAAAGTAAAGAACCTGATAAAAAAGCAAAAACAGAAGAGCCTTTTTACCCAGACTGT
GTTGATTCCCTTGAAAAATTGATTGAAAATGTAAAGGTAGAAGAAGCAGGAGCTATGTAT
TTAAGGCTGCATTCAACTAAAGTAGAAGTCCCCTCTTCCATATTGAACCAATTGCTTGGA
TTGCTGGCTTTTAGCAGATGTAGCTCTGAAGAGTTGAAAGGCCTTGCACAAAGACCATCT
TTGGTACTACCTACAGTGCGAAGGTACCCAAAAGATATTCAACTTCTGATTGATGTTTTT
AAAACAATTGAAACACCAACTGCAGATCACCACAGTATTATGATACGTGCTTATGTATCA
TCTGGTGCATCCAAGGAAGCAATCGACTTGTACAACAATATAGTCAGCAAAAATCTTGCT
GTTGATGTGGATACTTTCAATCACGTCTTACATGCACTTGCATTCTTAACTTCAAATCCA
AGAGTAAAACTGGACGTACTATACTACATGCGAAAACACAATGTCCAGCCTAATCACGCC
ACTTTTGCCAATTTAATCACTGCTCTAAGGTATCACAAAGATGAAACATCATTGGTTAGG
CAATGGTCAAAGGTAGTCAATGAAATGATGGCTCTTAAAATGGAACCAGGACTATCGATA
TACATTACAATGATGACTGCTGTAGAGAAAACCAGGCTTCCTCCGAAAACCAAACAAAAT
CTGCACCATTTCATTCTTGATGCAATTGAGGGAAAAAGCTTCAAAGTGGTTTCAGATTTA
GACTATTTCGCACCAACAGTTTTGTCGAATTTGGTAAAAAATGATCTGGAATTGTCGAAG
AAAGCTTTCCGTTTGATGAATAAAGCACCAAATTCTAAACTCTTTGTCAATTGGAAAATG
CAAAGTATATTTTTATCAAAGATTCTGGATGTTGTGGTGAACCAGGACCGGATTGAAAAT
TCGTGGGAATTAATCAGCTCAGTTTCTTACACGCATGCGATTTCGATCAACATGTACAAT
AGTCGACTTATAAAAGCTGCAGTTCGAGATGAAAGGCCAGAGTATATTCCTATTTTCTGT
GCACTTAGAGTTGGATTTGAACGTTTTGAACACATGGCATCATGTTTGAGTGCTGCTATA
AAGTTATTTCCCCATGCTGACAAAGACACAGTGACTCAATTCAAGAACATGACAGAATAC
TGTTTGAATAAAGCAATGACATGCAAAAAACAAGAAATATTCAATGCCATTATAAACCAT
TGCATCCAACTTGCTGCTTTATCCGCGGATGTTACTGTGCTACTGAACACTGTACAGATG
GTATTGCAAAAGCACAGATCTGCTGTGATCAGAGTTGAATCTGTGACAATGTGTGAAGAC
TTTGCTACAACAGTGGGAAATGCTGGATTAATCAAGAGAGTCCAATTGTTGCGAGAAATG
TTCGAGTCTCAAGAAAAAGTCCCCGAGGATAACAATAGAAAATTGAACGAAAAAAGAAAA
AAATGAAATCACAATAGCCTAATCCCGAAAGTTATGTTCCAATAAATAAACAAAATACAC
TTG

InterProScan

PANTHER	PTCD3 (IPR037387) - T[13-67] 2.7E-34 - T[100-334] 2.7E-34
Gene3D	TPR-like_helical_dom_sf (IPR011990) - T[23-252] 1.4E-17
Pfam	Pentatricopeptide_repeat (IPR002885) - T[132-189] 5.2E-7

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value