- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.2268881-2273638.13456.t
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
R30 [2,269,800 / 2,273,394]
Amino acid sequence
Length: 188
>Cisavi.CG.ENS81.R30.2268881-2273638.13456.p
DRISGSHQGYGFVEFLAEEDADYAIKILNMIKLYGKPIRVNKASSHQKNLDVGANLFIGN
LDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFEASDAAMEAMNGQH
LCNRPISISYAFKKDSKGERHGGAAERLLAVQNPLSQADRPHTMFADAPGPPPPMGPPMG
PPMPWGPP
Nucleotide sequence
Length: 662
>Cisavi.CG.ENS81.R30.2268881-2273638.13456.t
CTGTTTACGTTGGAGGCCTGGATGAAAAAGTTACGGAACCATTACTGTGGGAGTTGTTTT
TACAAGCTGGAGTAGTTGTCAGCACACATATGCCGAAGGATCGGATATCAGGAAGTCACC
AAGGATATGGCTTTGTTGAATTCCTTGCTGAGGAAGATGCAGATTATGCTATAAAGATTT
TAAATATGATTAAACTATATGGGAAGCCAATACGAGTTAATAAGGCTTCGTCTCATCAAA
AGAATTTGGATGTCGGTGCAAATCTTTTTATTGGGAACCTTGATCCTGAGATTGATGAAA
AGCTTCTGTACGACACTTTCAGTGCGTTCGGTGTCATTCTTCAAACCCCCAAAATTATGC
GGGATCCAGACACAGGCAACTCGAAAGGATATGCCTTTATCAACTTTGCTAGTTTTGAAG
CATCAGATGCAGCTATGGAGGCAATGAATGGCCAGCACTTGTGCAACAGGCCAATCAGTA
TATCATACGCGTTTAAAAAAGATTCAAAGGGTGAAAGACATGGTGGAGCAGCAGAAAGGT
TGCTGGCAGTTCAGAACCCATTATCACAGGCTGACAGACCACACACAATGTTTGCTGATG
CCCCAGGACCACCCCCGCCAATGGGCCCACCCATGGGACCTCCTATGCCATGGGGACCGC
CA
| ProSiteProfiles |
RRM_dom (IPR000504) - T[1-45] 10.787 - T[54-133] 17.165 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[1-47] 9.8E-12 - T[48-141] 1.0E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[1-136] 6.02E-36 |
| Pfam |
RRM_dom (IPR000504) - T[4-39] 4.2E-6 - T[56-126] 5.9E-20 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[53-135] 2.01968E-60 |
| SMART |
RRM_dom (IPR000504) - T[55-129] 4.4E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 89.697 % | 314 | 1.01E-107 |
| PABP1_HUMAN | 37.584 % | 93.2 | 2.16E-22 |
| PABP4_HUMAN | 39.597 % | 95.9 | 2.76E-23 |