- Transcript 'Moocul.CG.ELv1_2.S51...' >
- Transcript 'KH2012:KH.C3.577.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C7.546.v2....' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.2268881-2273638.13455.t
Possible name(s)
PABPC1; PABPC4; SF3B4
Gene model
Location
R30 [2,268,880 / 2,273,638]
Amino acid sequence
Length: 301
>Cisavi.CG.ENS81.R30.2268881-2273638.13455.p
MIKLYGKPIRVNKASSHQKNLDVGANLFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRD
PDTGNSKGYAFINFASFEASDAAMEAMNGQHLCNRPISISYAFKKDSKGERHGGAAERLL
AVQNPLSQADRPHTMFADAPSELIPPMDLAHMEMGMPPPPMPMPGMPPIGPPMLPPMGMP
SGPMPPPPMGMPPMQGGPPMHPPPGPMDQNGHMNNPNMMQQNWGNGPMGPPNMMPNSGPP
MGMGGPRMSNQFPPQRGPPPPMGPPMGPPMPWGPPQNMFDGGMPGNMRPRPPNMGMHMMP
R
Nucleotide sequence
Length: 1,337
>Cisavi.CG.ENS81.R30.2268881-2273638.13455.t
CGTGTTTCTGTGGAACCGTTCGAACAAAAATCAAAAAATACAAAATGGCTGCAGGACCCA
TATCAGAACGTAACCAAGACGCCACTGTTTACGTTGGAGGCCTGGATGAAAAAGTTACGG
AACCATTACTGTGGGAGTTGTTTTTACAAGCTGGAGTAGTTGTCAGCACACATATGCCGA
AGATCGGATATCAGGAAGTCACCAAGGATATGGCTTTGTTGAATTCCTTGCTGAGGAAGA
TGCAGATTATGCTATAAAGATTTTAAATATGATTAAACTATATGGGAAGCCAATACGAGT
TAATAAGGCTTCGTCTCATCAAAAGAATTTGGATGTCGGTGCAAATCTTTTTATTGGGAA
CCTTGATCCTGAGATTGATGAAAAGCTTCTGTACGACACTTTCAGTGCGTTCGGTGTCAT
TCTTCAAACCCCCAAAATTATGCGGGATCCAGACACAGGCAACTCGAAAGGATATGCCTT
TATCAACTTTGCTAGTTTTGAAGCATCAGATGCAGCTATGGAGGCAATGAATGGCCAGCA
CTTGTGCAACAGGCCAATCAGTATATCATACGCGTTTAAAAAAGATTCAAAGGGTGAAAG
ACATGGTGGAGCAGCAGAAAGGTTGCTGGCAGTTCAGAACCCATTATCACAGGCTGACAG
ACCACACACAATGTTTGCTGATGCCCCGTCAGAATTGATACCACCAATGGATCTTGCTCA
TATGGAAATGGGAATGCCTCCGCCACCAATGCCGATGCCAGGCATGCCCCCTATCGGCCC
ACCCATGTTACCCCCCATGGGAATGCCTTCGGGACCAATGCCCCCACCCCCGATGGGGAT
GCCCCCCATGCAAGGTGGACCCCCCATGCACCCACCACCTGGACCCATGGATCAAAACGG
ACACATGAACAACCCGAATATGATGCAACAAAATTGGGGGAACGGGCCGATGGGCCCACC
CAACATGATGCCAAACTCTGGACCGCCAATGGGCATGGGTGGACCGAGAATGTCAAACCA
GTTTCCTCCACAAAGAGGACCACCCCCGCCAATGGGCCCACCCATGGGACCTCCTATGCC
ATGGGGACCGCCACAAAACATGTTCGATGGTGGTATGCCGGGAAACATGAGACCCAGGCC
TCCCAATATGGGCATGCACATGATGCCCAGGTGAAAATCGCCTCCGTAGAGCGGATGTTC
GATTTCCTTGAATCAGAAGTCACAGTTGTGAAAACTATGCTGATAATTGGTTAAAATCTC
AAAGCATTGCCATCGTGATATATTCCGACGTCTTGTTGACGTTTTGAAATAAAATAGTAA
AAATTGTATAAACTTTA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[10-112] 1.4E-25 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[17-113] 7.25E-27 |
| CDD |
SF3B4_RRM2 (IPR034159) - T[24-106] 1.53173E-60 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[25-104] 17.165 |
| SMART |
RRM_dom (IPR000504) - T[26-100] 4.4E-24 |
| Pfam |
RRM_dom (IPR000504) - T[27-97] 1.5E-19 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SF3B4_HUMAN | 91.176 % | 267 | 2.6E-87 |
| PABP4_HUMAN | 41.88 % | 83.6 | 7.61E-18 |