- Transcript 'KH2012:KH.C12.136.v1...' >
- Transcript 'Cisavi.CG.ENS81.R16....' >
- Transcript 'Cisavi.CG.ENS81.R30....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R30.1759087-1763063.07033.t
Possible name(s)
HOXA4; HOXA5; HOXB5
Gene model
Location
R30 [1,759,086 / 1,763,063]
Amino acid sequence
Length: 209
>Cisavi.CG.ENS81.R30.1759087-1763063.07033.p
MDLNNASFNALLRHPIASDALLRHKTTLHASSTNTPSNGYFLNGNKFTEHQQFPSLTNEW
RFSDHPINAAHSNHVIKSHYRGNDVIRDGFTTSSSLRDITEGESDNNIEDNDATIYPWMK
RIHGGEAPDPSKRTRTAYTRHQTLELEKEFHYNRYLTRRRRIEVAHTLALTERQIKIWFQ
NRRMKWKKENKLNTLNSVVHVSGPPSGDE
Nucleotide sequence
Length: 1,105
>Cisavi.CG.ENS81.R30.1759087-1763063.07033.t
TGCAAGCGTTTTGAGTTAGCGTTTTGATTGTAAAGATGACCATTAAATAACTAACTAACT
TGTTAAAATGGACTTGAACAATGCGAGCTTCAATGCTTTATTGCGTCATCCAATAGCATC
AGACGCTTTATTACGTCACAAAACAACGTTACATGCAAGTTCAACGAATACGCCATCAAA
TGGATATTTTCTTAACGGGAACAAGTTTACGGAGCATCAACAATTTCCATCTTTGACGAA
CGAATGGCGGTTCTCTGACCATCCAATCAACGCTGCACATTCCAACCACGTGATCAAATC
TCATTATCGCGGAAATGATGTAATTCGCGATGGTTTTACCACGTCATCTAGTTTACGTGA
CATCACGGAGGGTGAAAGTGACAATAACATTGAGGATAATGACGCAACAATCTATCCGTG
GATGAAACGGATACACGGCGGGGAAGCACCAGACCCAAGCAAACGAACGCGGACGGCTTA
CACCCGCCACCAGACGTTGGAACTGGAAAAGGAGTTCCACTACAACCGGTATCTCACCCG
CAGACGTCGCATTGAGGTCGCCCACACCCTTGCACTCACCGAGCGGCAAATCAAGATTTG
GTTCCAAAATCGACGCATGAAATGGAAGAAGGAGAATAAATTGAATACATTAAACTCGGT
CGTTCACGTTTCCGGACCACCCAGTGGGGACGAATAAATCAATTATAGCTCCACCATGCG
ACTAAAAATGTTTTTTTTTTAAGTCATAAAAAATCAGATTTTAAGTCCAACTATTGTCTT
CATTTTGTTGATGACTTGTTCATATTACAAAGTTGTAGGTTCGTAATATGTGAGTTGTAT
AGGCTCATAATATTACTTTAATGAACAATAGTGATTAGACTTCGTCTTAACGCGAGGCTT
CATAATTGCCCGTTACTACACCTCTGCGGTTAACCATTTTGCAACTTCGTGACTTTGATT
TATAAACTGTAGAACGGATATTGACAACCACAGTTTCTTGACTTTGTTAAACATTCCCCA
ACATACCTGTCTGTTAATTGGTATATCTGCTCTCGGATACTGATTCCATCAATTATGGAC
AGACCTTTTTGCAACATATTCAACA
| PRINTS |
Homeobox_antennapedia (IPR017995) - T[114-121] 5.0E-6 - T[132-147] 5.0E-6 |
| ProSitePatterns |
Homeobox_Antennapedia_CS (IPR001827) - T[115-120] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[118-190] 2.45E-26 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[129-189] 21.864 |
| SMART |
Homeobox_dom (IPR001356) - T[131-193] 7.9E-26 |
| CDD |
Homeobox_dom (IPR001356) - T[132-190] 7.15728E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[132-188] 2.6E-21 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[153-164] 3.0E-9 - T[168-178] 3.0E-9 - T[178-187] 3.0E-9 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[164-187] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXB5_HUMAN | 67.033 % | 134 | 5.05E-39 |
| HXA5_HUMAN | 70.455 % | 135 | 3.71E-39 |
| HXA4_HUMAN | 62.626 % | 135 | 6.38E-39 |