- Transcript 'Moocul.CG.ELv1_2.S26...' >
- Transcript 'KH2012:KH.L20.1.v1.A...' >
- Molecular Tool 'En>Dmbx (Stolfi 2011)' >
- Transcript 'Boleac.CG.SB_v3.S264...'
Transcript Model
Transcript Id
Boleac.CG.SB_v3.S264.g06267.01.t
Possible name(s)
SNAI1; SNAI2; SNAI3
Gene model
Location
S264 [75,667 / 78,338]
Amino acid sequence
Length: 483
>Boleac.CG.SB_v3.S264.g06267.01.p
MRLSRSGSSPDEGIGLNGDSCRRKSFISRSVEVQDKPIDLSFKKWKNKNSVKCKIEKDDD
YDEIPATKTKNYPKQRQNCTVDSTLSPSVYHRSSSQEDPNSRTISEYHTALQNPIPSPYL
PWALAQPPGRLPYPPTVMGSLLHPALIMSQGVRQTSPGFSPYTLHMPPTIGPAFPTTDAF
NRLYNQKVLAELSRLYAQTSGLYGPKHTGGDAMTSINGRKDPLSARMQAIALREDPEDKS
AEGKYDVGFHVKKEVFSPQKLPLPVPRKRKLNEDSAAAHMFHPQPKTNSPFRLGNTADFG
TRYFNEATSFIGSSPTMVPKQTAISSGNGSTNSKPVDFKPCRYPCVECGRTYATYGGLMK
HEKSHRDPEPNNNFNCKTCSKEYNSLGALKMHIRTHTLPCKCHICGKAFSRTWLLQGHIR
THTGEKPYECTICKRAFADRSNLRAHMQTHESVKRYGCTNCDKTFSRISLLSRHQTSGCA
EKS
Nucleotide sequence
Length: 1,452
>Boleac.CG.SB_v3.S264.g06267.01.t
ATGCGTTTGTCGAGATCGGGCTCGAGTCCTGATGAAGGAATCGGACTCAATGGAGACTCA
TGTAGAAGAAAGTCTTTCATAAGTCGATCGGTTGAAGTGCAAGATAAACCTATTGATTTA
TCGTTTAAAAAATGGAAAAACAAGAACTCGGTTAAATGTAAAATAGAAAAAGATGACGAT
TATGATGAAATTCCAGCAACCAAAACGAAAAATTATCCAAAACAAAGACAAAACTGTACC
GTTGACTCTACGCTTTCACCTTCCGTATACCATAGGTCTTCCTCTCAAGAAGATCCTAAT
TCACGGACAATCTCAGAATATCACACTGCCTTGCAAAATCCCATACCCTCTCCATATTTA
CCATGGGCCTTAGCTCAACCTCCTGGAAGACTACCGTACCCTCCAACAGTCATGGGCTCC
TTATTGCATCCTGCTTTGATTATGTCACAAGGAGTAAGACAGACGTCGCCTGGATTTTCT
CCTTATACGCTTCATATGCCGCCAACTATTGGCCCGGCTTTTCCTACGACAGATGCTTTC
AATCGTTTGTATAATCAGAAAGTATTGGCTGAACTTTCTCGCCTATACGCCCAAACCAGT
GGTTTATACGGCCCGAAACATACTGGTGGTGATGCAATGACCAGTATCAATGGTAGAAAA
GATCCGTTGTCAGCGAGAATGCAGGCGATTGCTCTCCGTGAGGATCCCGAGGACAAAAGT
GCAGAGGGTAAATATGACGTCGGGTTTCATGTCAAAAAGGAAGTTTTTTCGCCACAGAAA
CTGCCACTTCCAGTTCCTAGAAAACGGAAATTGAACGAAGATTCCGCAGCAGCCCATATG
TTTCATCCTCAACCCAAAACAAACAGCCCTTTCCGCCTCGGAAATACAGCAGATTTTGGA
ACGAGATATTTCAACGAAGCAACATCTTTCATCGGTTCTTCTCCCACGATGGTACCAAAG
CAAACTGCCATTTCATCTGGAAACGGTTCGACAAACAGTAAGCCCGTGGATTTTAAACCA
TGCCGATACCCATGTGTGGAATGTGGACGGACATACGCCACGTATGGTGGGTTGATGAAA
CATGAAAAGAGTCATCGCGATCCAGAACCAAACAACAATTTCAATTGCAAGACCTGCAGT
AAAGAATATAACTCTCTTGGTGCGCTTAAAATGCACATACGGACGCACACGCTTCCTTGT
AAATGTCACATTTGCGGTAAAGCATTTTCTAGAACTTGGCTACTTCAAGGACATATTAGA
ACTCACACAGGTGAAAAGCCATACGAATGCACTATTTGTAAACGAGCGTTCGCTGACCGA
TCTAACCTGCGCGCACATATGCAAACTCATGAAAGTGTCAAGCGATATGGCTGCACCAAT
TGTGATAAAACATTCTCCAGGATCTCACTCCTCTCCCGTCACCAAACCAGTGGATGTGCC
GAAAAGTCATGA
| SMART |
Znf_C2H2_type (IPR013087) - T[343-365] 0.016 - T[374-396] 0.004 - T[400-422] 0.032 - T[428-450] 6.1E-5 - T[456-476] 49.0 |
| ProSiteProfiles |
Znf_C2H2_type (IPR013087) - T[343-370] 12.695 - T[374-397] 10.658 - T[400-427] 15.022 - T[428-455] 12.882 - T[456-483] 10.741 |
| ProSitePatterns |
Znf_C2H2_type (IPR013087) - T[345-365] . - T[376-396] . - T[400-422] . - T[430-450] . |
| SUPERFAMILY |
Znf_C2H2_sf (IPR036236) - T[372-411] 6.88E-8 - T[399-450] 4.54E-17 - T[436-478] 1.1E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNAI1_HUMAN | 60.87 % | 182 | 4.52E-54 |
| SNAI3_HUMAN | 64.964 % | 195 | 7.78E-59 |
| SNAI2_HUMAN | 67.391 % | 207 | 1.1E-63 |