Login
Help

TRANSCRIPT CARD

Submit your Data

  1. Transcript 'Haaura.CG.MTP2014.S5...'
  2. Transcript 'Cisavi.CG.ENS81.R27....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R27.1947497-1967094.18414.t

Possible name(s)

HDAC1; HDAC2; HDAC3

Location

R27 [1,947,616 / 1,967,062]

Sequences

Amino acid sequence

Length: 451

>Cisavi.CG.ENS81.R27.1947497-1967094.18414.p
MALTNPGGNRKVCYYYDSDIGNNYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKC
NAEEMSRYHSDDYIKFLRSIRPDNMSEYTKQMQRFNVGEDCPVFDGLYEFCQLSGGGSIA
GAVKINKHQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGESFPRTGDLRVGMILDAGKGKYYALNFPLRDGMDDEC
YEQIFQPVITKVMEYYQPSAVVLQCGADSLTGDRLGCFNLTVKGCHAKCLEYVKKFNVPI
LMLGGGGYTIRNVARCWTYETAVALGQEIPNELPYNDYFEYFGPDFKLHISPSNMSNQNT
MEYLQKIRQRLFENLRMLPHAPGVQMQDIPPDAIVSGSDDETVDNPDQRTSIRASDKRIQ
RPDEYSDSEDEGEGGRKNEESHKKKKRKYME

Nucleotide sequence

Length: 1,825

>Cisavi.CG.ENS81.R27.1947497-1967094.18414.t
ATGGCCCTGACAAACCCTGGAGGAAACCGGAAAGTGTGCTACTATTATGACTCTGACATC
GGGAACAATTATTATGGACAAGGTCACCCGATGAAGCCACATAGAATTCGCATGACTCAC
AACCTTCTTCTTAATTATGGGCTTTACAGAAAAATGGAAATCTATCGTCCACATAAATGC
AATGCGGAAGAAATGTCCCGTTACCATAGTGATGACTACATCAAATTTCTACGAAGTATT
AGACCAGACAACATGTCCGAATACACAAAGCAAATGCAGCGATTTAATGTTGGTGAAGAT
TGCCCGGTATTTGATGGACTTTATGAGTTCTGCCAGTTATCTGGTGGTGGTTCCATTGCT
GGAGCAGTTAAGATCAATAAGCACCAAACCGATATTGCAATAAATTGGGCAGGGGGCCTT
CACCATGCAAAAAAATCTGAAGCATCAGGATTTTGCTATGTCAATGACATTGTACTGGCT
ATATTAGAGTTACTAAAATACCACCAGCGTGTCCTGTACATCGACATAGACATCCATCAT
GGAGATGGGGTGGAGGAGGCTTTTTACACAACCGACCGCGTTATGACTGTGTCTTTCCAT
AAATACGGTGAATCTTTCCCACGAACTGGTGATCTTCGGGTAGGAATGATATTGGACGCT
GGGAAAGGAAAATACTACGCTCTTAACTTCCCTCTCAGAGATGGAATGGACGACGAATGC
TATGAGCAGATCTTCCAGCCTGTTATTACCAAGGTGATGGAATATTACCAACCCAGTGCA
GTTGTGTTGCAGTGCGGTGCTGATTCCTTGACCGGAGATCGACTCGGTTGTTTCAACCTA
ACAGTGAAAGGTTGTCATGCGAAATGCCTGGAATACGTGAAGAAGTTCAATGTCCCAATC
CTGATGCTGGGAGGTGGAGGGTATACCATCCGGAATGTGGCTCGATGCTGGACTTATGAG
ACGGCTGTCGCACTTGGTCAGGAAATCCCGAATGAGCTGCCCTATAATGATTACTTCGAG
TATTTTGGACCAGATTTTAAGCTCCACATCAGTCCTAGCAACATGAGCAATCAGAACACG
ATGGAATACCTGCAGAAAATCCGCCAGCGATTGTTCGAAAACTTAAGGATGCTCCCTCAT
GCCCCTGGTGTTCAAATGCAAGACATTCCACCTGATGCTATTGTATCTGGAAGCGATGAT
GAAACTGTTGACAATCCTGACCAAAGAACTTCGATTCGCGCATCGGACAAACGGATCCAG
CGTCCAGATGAATACTCCGACTCCGAGGATGAGGGCGAAGGAGGCCGGAAGAACGAGGAG
TCGCACAAAAAGAAGAAAAGAAAGTACATGGAAGGTGACGCGACCGTTCAGGAATCCAAA
GCGCCTGTGAGTGGGACACCCGCGCAAAACGGAGTGACGAAGCAAGAAGATGCGACTTCA
GACTCCAGTGCGCCAGTAAAAACAGCCGAAAACGGGGAAAATCCTGTGACTGGCGACGCT
AACAGCAAAGACGCGGTTGTACCAGAAACGGCCACCGAAGAGAAAGCAAACTCAGAAGCT
AGAAGCGACCCCCCACCTGATGCAACTGAAGAAAAGGAAGCAGCATCTAGTGTCGAGGCA
AAAGCAACTGAACCAGATCCCGCGCCCGTGGAAGAGCAACAACCTGCTGATGAAAAGATG
GAGATCTGATCACTGCTTTGACAACCTCCCGCCATTCCCATCTTTGCCATTTTGGACTAG
TCGGCTCGCTTCCCGCGAACCCTTTCAATATGTCCATTCTTGTATAAAACACATTTTCGG
TGCAATTTCACCGCATTCTCACAGG

InterProScan

PIRSF
His_deacetylse_1 (IPR003084) - T[1-451] 1.1E-216
Gene3D
His_deacetylse_dom_sf (IPR037138) - T[8-380] 2.2E-165
PANTHER
His_deacetylse (IPR000286) - T[8-447] 2.2E-252
SUPERFAMILY
Ureohydrolase_dom_sf (IPR023696) - T[10-378] 2.35E-123
Pfam
His_deacetylse_dom (IPR023801) - T[29-322] 2.0E-77
PRINTS
His_deacetylse_1 (IPR003084) - T[31-48] 1.5E-69 - T[64-82] 1.5E-69 - T[95-112] 1.5E-69 - T[116-136] 1.5E-69 - T[157-173] 1.5E-69 - T[219-232] 1.5E-69 - T[236-254] 1.5E-69
PRINTS
His_deacetylse (IPR000286) - T[138-161] 1.4E-24 - T[170-185] 1.4E-24 - T[258-268] 1.4E-24

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HDAC1_HUMAN 82.998 % 742 0
HDAC2_HUMAN 82.589 % 759 0
HDAC3_HUMAN 58.314 % 530 0