Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R27.1947497-1967094.18412.t

Possible name(s)

HDAC1; HDAC2; HDAC3

Gene model

Cisavi.CG.ENS81.R27.1947497-1967094

Location

R27 [1,947,496 / 1,967,094]

Sequences

Amino acid sequence

Length: 300

>Cisavi.CG.ENS81.R27.1947497-1967094.18412.p
MALTNPGGNRKVCYYYDSDIGNNYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKC
NAEEMSRYHSDDYIKFLRSIRPDFKLHISPSNMSNQNTMEYLQKIRQRLFENLRMLPHAP
GVQMQDIPPDAIVSGSDDETVDNPDQRTSIRASDKRIQRPDEYSDSEDEGEGGRKNEESH
KKKKRKYMEGDATVQESKAPVSGTPAQNGVTKQEDATSDSSAPVKTAENGENPVTGDANS
KDAVVPETATEEKANSEARSDPPPDATEEKEAASSVEAKATEPDPAPVEEQQPADEKMEI

Nucleotide sequence

Length: 1,191

>Cisavi.CG.ENS81.R27.1947497-1967094.18412.t
GAAATTTATGCAGGGCCTCGAAGTTAAAATTCTCTATTTGTTTAAAGTTAAACTGCTTGC
CAAGTGCCAACTGCCAAGTGACTTTGGACATCTTTTAATAGTTTAATTAGTTCAACAATC
ATGGCCCTGACAAACCCTGGAGGAAACCGGAAAGTGTGCTACTATTATGACTCTGACATC
GGGAACAATTATTATGGACAAGGTCACCCGATGAAGCCACATAGAATTCGCATGACTCAC
AACCTTCTTCTTAATTATGGGCTTTACAGAAAAATGGAAATCTATCGTCCACATAAATGC
AATGCGGAAGAAATGTCCCGTTACCATAGTGATGACTACATCAAATTTCTACGAAGTATT
AGACCAGATTTTAAGCTCCACATCAGTCCTAGCAACATGAGCAATCAGAACACGATGGAA
TACCTGCAGAAAATCCGCCAGCGATTGTTCGAAAACTTAAGGATGCTCCCTCATGCCCCT
GGTGTTCAAATGCAAGACATTCCACCTGATGCTATTGTATCTGGAAGCGATGATGAAACT
GTTGACAATCCTGACCAAAGAACTTCGATTCGCGCATCGGACAAACGGATCCAGCGTCCA
GATGAATACTCCGACTCCGAGGATGAGGGCGAAGGAGGCCGGAAGAACGAGGAGTCGCAC
AAAAAGAAGAAAAGAAAGTACATGGAAGGTGACGCGACCGTTCAGGAATCCAAAGCGCCT
GTGAGTGGGACACCCGCGCAAAACGGAGTGACGAAGCAAGAAGATGCGACTTCAGACTCC
AGTGCGCCAGTAAAAACAGCCGAAAACGGGGAAAATCCTGTGACTGGCGACGCTAACAGC
AAAGACGCGGTTGTACCAGAAACGGCCACCGAAGAGAAAGCAAACTCAGAAGCTAGAAGC
GACCCCCCACCTGATGCAACTGAAGAAAAGGAAGCAGCATCTAGTGTCGAGGCAAAAGCA
ACTGAACCAGATCCCGCGCCCGTGGAAGAGCAACAACCTGCTGATGAAAAGATGGAGATC
TGATCACTGCTTTGACAACCTCCCGCCATTCCCATCTTTGCCATTTTGGACTAGTCGGCT
CGCTTCCCGCGAACCCTTTCAATATGTCCATTCTTGTATAAAACACATTTTCGGTGCAAT
TTCACCGCATTCTCACAGGTTTTAAAATAATAAAACATTTGTACAAATCTA

InterProScan

Gene3D	His_deacetylse_dom_sf (IPR037138) - T[3-83] 4.8E-25
PANTHER	His_deacetylse (IPR000286) - T[8-83] 1.7E-72 - T[82-209] 1.7E-72
SUPERFAMILY	Ureohydrolase_dom_sf (IPR023696) - T[11-89] 7.19E-18
PRINTS	His_deacetylse_1 (IPR003084) - T[31-48] 1.9E-17 - T[64-82] 1.9E-17

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
HDAC1_HUMAN	89.61 %	160	6.78E-46
HDAC2_HUMAN	84.337 %	163	9.09E-47
HDAC3_HUMAN	52.055 %	101	2.96E-24