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- Transcript 'Cisavi.CG.ENS81.R26....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R26.724933-737561.10712.t
Possible name(s)
IGHMBP2; SETX; UPF1
Gene model
Location
R26 [729,989 / 737,546]
Amino acid sequence
Length: 642
>Cisavi.CG.ENS81.R26.724933-737561.10712.p
LTEILSAADVILATNQISPTGAHSKGPLQHLPPDHFDDVIIDECGQSLEAACWISILRAR
RCILAGDHLQLPPTIISHKAAENGLSTTLLERMIGLHGEQVVAMLTEQYRMHAHIMQWAS
NGMYDGKLVANYAVQSHLLSDLPHVEQTEDTGIPMLLIDTSGCNMGEMESEESISKANEG
EAMIVCAHVDSLVKAGVGEREIAVISPYNLQVDILRQMLKEKHPNIEIKSVDGFQGREKE
AVILTLVRSNPHKEIGFLSDRRRLNVAVTRARRHLTVICDSTTVCNDKFIKSLVDHITKH
GEVRTGFEYADEDLQSSTNLRPKQSKKTSPKPAMPQLTLIEIQAKYQYIIEQLLGQRNIL
KGQSESTLFNFSELTVTIKQIINARDHFEISFPAALNSAERKAIHNLCEEMGFGHQSIGE
DKERQVVISVPALDSPDNILPETKQEVNKQTTTETMDKNILTPVESVSKESIERFDLSQL
PEDNMTMHLIHCERLIKMKEQVKTPQNENRKKIHSQPSKSKNKKNTKSANKQRNTGDFDL
LNQAISSNKFCFHSNCAASITTTGQLCSICRKTFCLKHHIPEVHGCGAQAHINARRQIIR
DGVLYSGSGVPDRKPDPTKRAQLKNRLDSKMKSLEKERKSGK
Nucleotide sequence
Length: 1,926
>Cisavi.CG.ENS81.R26.724933-737561.10712.t
CTTACTGAAATTTTATCAGCCGCAGATGTCATTCTTGCAACAAATCAAATCTCCCCAACA
GGTGCTCATTCGAAGGGACCTCTCCAGCACTTGCCCCCCGATCATTTTGATGATGTGATA
ATCGACGAATGTGGTCAATCACTTGAAGCAGCGTGCTGGATCTCTATTTTACGAGCTCGA
CGCTGCATTCTTGCCGGAGATCATTTACAGCTCCCACCCACTATTATATCACACAAAGCA
GCTGAGAATGGTTTATCCACCACGCTACTTGAGCGCATGATCGGTCTACATGGGGAGCAA
GTTGTGGCGATGCTAACCGAGCAATATCGAATGCATGCTCATATTATGCAGTGGGCATCC
AATGGAATGTATGATGGGAAACTTGTTGCCAATTATGCAGTACAATCACATTTGTTGAGT
GATCTGCCACATGTTGAACAAACTGAAGATACTGGCATTCCTATGTTGTTGATTGACACT
TCTGGTTGTAACATGGGGGAAATGGAATCTGAAGAAAGCATTTCAAAAGCCAATGAAGGA
GAAGCGATGATAGTTTGTGCTCATGTGGATAGTTTGGTAAAAGCTGGTGTAGGTGAAAGA
GAAATAGCAGTTATATCGCCGTATAACTTGCAGGTTGACATATTACGTCAAATGCTGAAA
GAAAAACATCCAAATATAGAAATCAAATCTGTGGATGGTTTCCAGGGTAGAGAAAAAGAA
GCTGTTATCCTCACACTCGTTCGGTCAAATCCTCACAAAGAAATAGGATTTCTATCTGAT
CGACGAAGATTAAATGTTGCAGTGACGAGAGCTCGGCGCCACCTAACAGTTATTTGCGAT
TCAACGACAGTTTGTAACGACAAATTTATCAAATCTCTAGTTGATCATATTACCAAGCAT
GGGGAGGTGCGGACTGGGTTTGAATACGCCGATGAGGATTTACAAAGTTCCACTAATCTA
AGACCTAAGCAAAGTAAAAAAACCTCTCCGAAACCAGCAATGCCACAACTGACGCTTATT
GAAATTCAGGCAAAATATCAGTATATCATTGAACAATTGCTTGGACAAAGAAATATTCTA
AAAGGGCAATCTGAATCGACTTTATTCAACTTCTCAGAACTTACTGTTACTATAAAGCAG
ATAATCAACGCACGCGATCATTTCGAAATATCATTCCCTGCCGCATTAAACTCTGCTGAA
AGAAAAGCTATACATAATTTGTGCGAAGAAATGGGCTTCGGACACCAAAGCATAGGTGAA
GATAAGGAAAGGCAGGTGGTGATCAGTGTTCCTGCATTAGATAGTCCTGATAATATTCTT
CCTGAGACTAAACAAGAAGTGAATAAGCAAACGACTACGGAAACCATGGATAAAAACATT
TTGACACCGGTCGAATCAGTTTCGAAGGAATCTATTGAACGATTTGATCTTTCTCAGTTG
CCAGAAGACAACATGACAATGCATTTAATTCACTGTGAAAGACTCATTAAAATGAAGGAA
CAAGTTAAAACCCCACAAAATGAAAATCGCAAGAAAATACATTCTCAGCCTTCCAAATCT
AAAAACAAGAAAAACACCAAATCTGCCAACAAACAACGAAATACTGGTGATTTTGACCTA
CTCAACCAAGCCATCTCTTCAAACAAATTTTGCTTCCATAGCAACTGTGCAGCTTCTATC
ACAACTACCGGACAACTTTGCTCTATTTGTAGGAAAACTTTTTGCTTGAAACATCATATA
CCTGAGGTTCATGGTTGTGGGGCACAGGCCCATATCAATGCACGTCGTCAGATAATAAGA
GATGGGGTGTTGTATAGTGGGAGTGGAGTACCAGACCGCAAACCAGATCCGACCAAACGC
GCTCAGCTCAAAAATCGACTTGATTCCAAGATGAAATCGCTCGAAAAAGAGAGAAAGAGC
GGAAAG
| TIGRFAM |
SMUBP-2/Hcs1-like (IPR004483) - T[3-306] 9.3E-115 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[4-291] 1.67E-42 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[361-434] 9.0E-14 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[368-432] 11.956 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[377-429] 2.35E-8 |
| Pfam |
R3H_dom (IPR001374) - T[389-429] 1.2E-9 |
| SUPERFAMILY |
AN1-like_Znf (IPR035896) - T[537-607] 3.27E-14 |
| Gene3D |
AN1-like_Znf (IPR035896) - T[541-601] 3.3E-5 |
| ProSiteProfiles |
Znf_AN1 (IPR000058) - T[548-602] 8.132 |
| Pfam |
Znf_AN1 (IPR000058) - T[551-589] 2.8E-6 |
| SMART |
Znf_AN1 (IPR000058) - T[551-591] 1.2E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RENT1_HUMAN | 34.106 % | 146 | 1.81E-36 |
| SMBP2_HUMAN | 43.478 % | 523 | 1.17E-174 |
| DNA2_HUMAN | 30.742 % | 134 | 1.43E-32 |