- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Moocul.CG.ELv1_2.S10...' >
- Transcript 'Cisavi.CG.ENS81.R26....' >
- Transcript 'KH2012:KH.C8.546.v2....' >
- Transcript 'Cisavi.CG.ENS81.R26....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R26.724933-737561.10711.t
Possible name(s)
IGHMBP2; SETX; UPF1
Gene model
Location
R26 [724,932 / 737,561]
Amino acid sequence
Length: 989
>Cisavi.CG.ENS81.R26.724933-737561.10711.p
HITMSIEDFVSKQLDLLAEEHSAEVEENRIVNSNIPLSVLKRKGLCIPKLEVASVKTGLY
GRTVAKFGLKSGESLPCNVFKAGDIVGLGRCPTETSNSGIVSHVSEKLVSVAFDNTEMRD
QLDSFAQNHNSLTLMKLANEVTYKRLKKVLGDLKKYTEGPAQHMIEVLFGHATPLKSNHP
DLKFVNSNLNECQQNAVKFALSQNQLAIIHGPPGTGKTTTVVEVIAQLVKSGRKVLACAP
SNVAVDNLVEKLSRISGTCDKIKVVRIGHPARILEHELKQMSLDALVSHSDAAAIVRDVR
SDIENVQKKLSHCPDKGKRHSLRQERKLLFSELKQREKKALTEILSAADVILATNQISPT
GAHSKGPLQHLPPDHFDDVIIDECGQSLEAACWISILRARRCILAGDHLQLPPTIISHKA
AENGLSTTLLERMIGLHGEQVVAMLTEQYRMHAHIMQWASNGMYDGKLVANYAVQSHLLS
DLPHVEQTEDTGIPMLLIDTSGCNMGEMESEESISKANEGEAMIVCAHVDSLVKAGVGER
EIAVISPYNLQVDILRQMLKEKHPNIEIKSVDGFQGREKEAVILTLVRSNPHKEIGFLSD
RRRLNVAVTRARRHLTVICDSTTVCNDKFIKSLVDHITKHGEVRTGFEYADEDLQSSTNL
RPKQSKKTSPKPAMPQLTLIEIQAKYQYIIEQLLGQRNILKGQSESTLFNFSELTVTIKQ
IIVENSTFDSSKTVVMKNARDHFEISFPAALNSAERKAIHNLCEEMGFGHQSIGEDKERQ
VVISVPALDSPDNILPETKQEVNKQTTTETMDKNILTPVESQLPEDNMTMHLIHCERLIK
MKEQVKTPQNENRKKIHSQPSKSKNKKNTKSANKQRNTGDFDLLNQAISSNKFCFHSNCA
ASITTTGQLCSICRKTFCLKHHIPEVHGCGAQAHINARRQIIRDGVLYSGSGVPDRKPDP
TKRAQLKNRLDSKMKSLEKERKSGKNHRS
Nucleotide sequence
Length: 3,015
>Cisavi.CG.ENS81.R26.724933-737561.10711.t
ACGTAATAAATTTGCCAAACAAATGAAAATAAGTTGATCTCACCCCACATAACCATGTCA
ATCGAGGATTTTGTGAGCAAACAGCTTGATCTTCTTGCAGAAGAGCATAGTGCAGAGGTG
GAGGAGAACCGAATTGTGAATTCCAATATTCCTCTGTCTGTTCTTAAAAGAAAAGGTTTA
TGCATTCCTAAACTTGAAGTAGCCAGTGTGAAAACTGGACTTTATGGAAGAACTGTTGCA
AAGTTTGGGTTGAAATCTGGAGAGAGCTTGCCGTGCAATGTTTTCAAAGCAGGTGACATA
GTGGGGTTAGGCCGATGTCCAACTGAAACGTCCAACAGTGGAATTGTATCCCACGTTAGT
GAGAAGTTGGTTTCGGTTGCATTTGATAACACTGAGATGAGAGATCAATTGGACTCCTTT
GCCCAAAATCACAATTCTCTCACTCTCATGAAACTGGCCAATGAAGTTACTTACAAGCGA
CTAAAAAAGGTGCTTGGTGATTTAAAGAAGTACACTGAAGGACCTGCCCAGCATATGATT
GAAGTTTTATTTGGTCATGCGACACCTCTTAAATCAAATCATCCTGATCTAAAGTTCGTC
AATTCAAACTTGAATGAATGCCAACAGAATGCGGTCAAGTTTGCGTTGTCACAAAACCAA
CTAGCTATCATTCATGGACCGCCTGGTACTGGGAAAACCACCACTGTAGTTGAGGTTATT
GCTCAGCTCGTCAAGTCTGGTAGAAAGGTGTTGGCTTGTGCACCCTCAAATGTTGCCGTG
GATAATTTGGTGGAGAAATTGTCGCGTATCTCAGGTACCTGTGATAAAATCAAGGTTGTG
CGGATTGGTCATCCAGCAAGGATACTGGAACACGAGTTGAAGCAGATGTCATTGGATGCT
CTGGTGTCGCACAGTGATGCTGCAGCTATCGTGAGGGATGTACGCTCTGATATCGAAAAC
GTGCAGAAAAAACTCTCTCACTGTCCCGACAAAGGAAAGAGGCATTCCTTAAGACAAGAA
CGAAAATTACTTTTTTCCGAACTAAAACAGCGTGAAAAGAAAGCACTTACTGAAATTTTA
TCAGCCGCAGATGTCATTCTTGCAACAAATCAAATCTCCCCAACAGGTGCTCATTCGAAG
GGACCTCTCCAGCACTTGCCCCCCGATCATTTTGATGATGTGATAATCGACGAATGTGGT
CAATCACTTGAAGCAGCGTGCTGGATCTCTATTTTACGAGCTCGACGCTGCATTCTTGCC
GGAGATCATTTACAGCTCCCACCCACTATTATATCACACAAAGCAGCTGAGAATGGTTTA
TCCACCACGCTACTTGAGCGCATGATCGGTCTACATGGGGAGCAAGTTGTGGCGATGCTA
ACCGAGCAATATCGAATGCATGCTCATATTATGCAGTGGGCATCCAATGGAATGTATGAT
GGGAAACTTGTTGCCAATTATGCAGTACAATCACATTTGTTGAGTGATCTGCCACATGTT
GAACAAACTGAAGATACTGGCATTCCTATGTTGTTGATTGACACTTCTGGTTGTAACATG
GGGGAAATGGAATCTGAAGAAAGCATTTCAAAAGCCAATGAAGGAGAAGCGATGATAGTT
TGTGCTCATGTGGATAGTTTGGTAAAAGCTGGTGTAGGTGAAAGAGAAATAGCAGTTATA
TCGCCGTATAACTTGCAGGTTGACATATTACGTCAAATGCTGAAAGAAAAACATCCAAAT
ATAGAAATCAAATCTGTGGATGGTTTCCAGGGTAGAGAAAAAGAAGCTGTTATCCTCACA
CTCGTTCGGTCAAATCCTCACAAAGAAATAGGATTTCTATCTGATCGACGAAGATTAAAT
GTTGCAGTGACGAGAGCTCGGCGCCACCTAACAGTTATTTGCGATTCAACGACAGTTTGT
AACGACAAATTTATCAAATCTCTAGTTGATCATATTACCAAGCATGGGGAGGTGCGGACT
GGGTTTGAATACGCCGATGAGGATTTACAAAGTTCCACTAATCTAAGACCTAAGCAAAGT
AAAAAAACCTCTCCGAAACCAGCAATGCCACAACTGACGCTTATTGAAATTCAGGCAAAA
TATCAGTATATCATTGAACAATTGCTTGGACAAAGAAATATTCTAAAAGGGCAATCTGAA
TCGACTTTATTCAACTTCTCAGAACTTACTGTTACTATAAAGCAGATAATCGTAGAAAAC
AGCACATTTGACAGCTCTAAAACTGTAGTTATGAAGAACGCACGCGATCATTTCGAAATA
TCATTCCCTGCCGCATTAAACTCTGCTGAAAGAAAAGCTATACATAATTTGTGCGAAGAA
ATGGGCTTCGGACACCAAAGCATAGGTGAAGATAAGGAAAGGCAGGTGGTGATCAGTGTT
CCTGCATTAGATAGTCCTGATAATATTCTTCCTGAGACTAAACAAGAAGTGAATAAGCAA
ACGACTACGGAAACCATGGATAAAAACATTTTGACACCGGTCGAATCACAGTTGCCAGAA
GACAACATGACAATGCATTTAATTCACTGTGAAAGACTCATTAAAATGAAGGAACAAGTT
AAAACCCCACAAAATGAAAATCGCAAGAAAATACATTCTCAGCCTTCCAAATCTAAAAAC
AAGAAAAACACCAAATCTGCCAACAAACAACGAAATACTGGTGATTTTGACCTACTCAAC
CAAGCCATCTCTTCAAACAAATTTTGCTTCCATAGCAACTGTGCAGCTTCTATCACAACT
ACCGGACAACTTTGCTCTATTTGTAGGAAAACTTTTTGCTTGAAACATCATATACCTGAG
GTTCATGGTTGTGGGGCACAGGCCCATATCAATGCACGTCGTCAGATAATAAGAGATGGG
GTGTTGTATAGTGGGAGTGGAGTACCAGACCGCAAACCAGATCCGACCAAACGCGCTCAG
CTCAAAAATCGACTTGATTCCAAGATGAAATCGCTCGAAAAAGAGAGAAAGAGCGGAAAG
AATCACAGAAGCTAG
| TIGRFAM |
SMUBP-2/Hcs1-like (IPR004483) - T[20-646] 1.3E-189 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[185-458] 0.004 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[186-631] 1.62E-68 |
| SMART |
AAA+_ATPase (IPR003593) - T[203-388] 0.0016 |
| Gene3D |
R3H_dom_sf (IPR036867) - T[719-789] 6.9E-13 |
| ProSiteProfiles |
R3H_dom (IPR001374) - T[721-787] 11.205 |
| SUPERFAMILY |
R3H_dom_sf (IPR036867) - T[742-784] 9.81E-8 |
| Pfam |
R3H_dom (IPR001374) - T[744-784] 1.7E-9 |
| SUPERFAMILY |
AN1-like_Znf (IPR035896) - T[880-950] 1.7E-14 |
| ProSiteProfiles |
Znf_AN1 (IPR000058) - T[891-945] 8.132 |
| SMART |
Znf_AN1 (IPR000058) - T[894-934] 1.2E-4 |
| Pfam |
Znf_AN1 (IPR000058) - T[894-932] 4.6E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RENT1_HUMAN | 33.843 % | 198 | 4.57E-52 |
| SMBP2_HUMAN | 46.766 % | 834 | 0 |
| SETX_HUMAN | 29.346 % | 166 | 1.82E-41 |