- Transcript 'Phfumi.CG.MTP2014.S7...' >
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- Transcript 'Harore.CG.MTP2014.S2...' >
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- Transcript 'Cisavi.CG.ENS81.R25....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R25.1527547-1529443.15015.t
Possible name(s)
HOXB13; HOXC12; HOXD12
Gene model
Location
R25 [1,527,546 / 1,529,443]
Amino acid sequence
Length: 488
>Cisavi.CG.ENS81.R25.1527547-1529443.15015.p
MTAKVSSNEYYCNMSFMFGDMSTPPYRVPQEADAIFTSEGSAQEGIVRAEETLRDPAKAT
SCSEAHVSENLTCFIPMTVHESYHMPEYSDYSRAASQHVGRKWGYDETKPSLSHPKSGVK
TEEQSPFNLMHKPTKQGITHSRDVSEISRVPSGFERSSIQYHGGFGHRQHVSKPDDGIAL
RTSPPARSPIATERENGRSLSTSGSDSGVLGNLVHPVPGRTSAGIPSHDQAVHSNELYGY
RCLPNNTETFPKTISASVGTMSQLAAAHHNQRYSFPHSTHALETPFEHVSHSSIAPAHAN
ESLYFGMDPYGTQLGARQYPPLVQPYYPSYPAPALHPSADFSSSFPPNHAVPHDHVALVS
HHHHHTSPYHYHHGGLTGPPFSTDVARHGVLNQRRRRRPYTKFQLAELEREFTANEFISR
EMREEIATRVGLNDRQVKIWFQNRRMKKKRMLHRGEHSIEEDEHVGLNEDPELHPTNIGP
PCDNYMTG
Nucleotide sequence
Length: 1,467
>Cisavi.CG.ENS81.R25.1527547-1529443.15015.t
ATGACAGCGAAAGTAAGCAGCAACGAATATTACTGCAATATGAGTTTTATGTTCGGAGAC
ATGTCGACACCACCCTACAGAGTTCCCCAAGAAGCTGACGCCATCTTTACATCAGAAGGA
TCGGCTCAGGAAGGCATCGTTCGGGCGGAAGAAACACTCAGGGATCCGGCCAAAGCTACA
TCTTGTTCGGAAGCACACGTTTCGGAAAACTTGACGTGTTTTATACCAATGACGGTGCAC
GAATCCTACCACATGCCAGAGTATTCCGATTACAGCAGGGCAGCCTCGCAACACGTTGGG
AGAAAGTGGGGTTACGACGAAACTAAACCATCTCTCAGTCATCCAAAATCGGGGGTTAAA
ACTGAAGAGCAATCCCCGTTTAATTTAATGCACAAGCCTACTAAACAGGGTATTACCCAC
AGTCGAGATGTTTCAGAGATTTCAAGAGTTCCATCTGGATTCGAAAGGTCCTCAATTCAA
TACCATGGGGGATTCGGTCATAGGCAACATGTAAGTAAACCGGATGATGGAATCGCTTTG
CGCACCTCTCCACCGGCACGTTCGCCAATCGCCACCGAAAGAGAAAATGGCCGCTCGCTC
TCTACATCGGGCTCGGACTCGGGCGTCCTCGGGAACCTCGTGCATCCAGTCCCGGGCAGA
ACGAGTGCAGGGATCCCATCTCATGATCAAGCCGTCCATTCTAACGAACTTTATGGATAC
CGGTGTTTGCCAAACAATACTGAGACATTCCCAAAGACTATTTCAGCAAGCGTTGGTACA
ATGAGCCAACTTGCTGCTGCCCACCATAACCAACGTTACAGCTTTCCCCACTCAACACAT
GCACTTGAAACACCATTTGAGCATGTTAGTCATTCTAGCATCGCTCCTGCCCACGCAAAT
GAAAGCTTATACTTTGGCATGGATCCTTACGGTACACAACTAGGTGCAAGACAGTACCCC
CCACTTGTTCAACCCTACTACCCAAGTTATCCTGCCCCTGCCTTACACCCGTCAGCAGAT
TTCTCCAGTTCATTTCCCCCAAATCACGCTGTACCGCACGACCATGTAGCCCTCGTCTCA
CACCACCACCACCACACGTCTCCGTACCATTACCACCATGGGGGATTAACCGGCCCACCA
TTTTCCACCGACGTCGCCCGACATGGGGTGTTGAACCAACGTAGAAGACGGAGACCGTAC
ACCAAATTCCAACTTGCCGAACTTGAACGGGAATTCACCGCCAACGAGTTTATCAGCCGC
GAAATGAGAGAAGAAATCGCTACCAGGGTCGGACTTAACGACAGACAGGTCAAAATCTGG
TTCCAAAACAGGCGGATGAAAAAGAAGAGAATGTTGCATCGCGGAGAGCATTCTATTGAA
GAAGACGAACACGTAGGGCTTAATGAAGACCCTGAGTTACATCCAACTAATATTGGTCCA
CCGTGTGACAATTACATGACCGGCTAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[378-451] 2.44E-22 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[391-451] 20.407 |
| SMART |
Homeobox_dom (IPR001356) - T[393-455] 6.0E-22 |
| CDD |
Homeobox_dom (IPR001356) - T[394-451] 4.29285E-23 |
| Pfam |
Homeobox_dom (IPR001356) - T[394-450] 5.3E-19 |
| PRINTS |
HTH_motif (IPR000047) - T[422-431] 4.5E-5 - T[431-447] 4.5E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[426-449] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HXC12_HUMAN | 65.574 % | 95.1 | 6.33E-22 |
| HXD12_HUMAN | 63.934 % | 94 | 1.32E-21 |
| HXC11_HUMAN | 56.897 % | 80.9 | 7.23E-17 |