Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R234.137830-142631.02975.t

Possible name(s)

RPL18A

Gene model

Cisavi.CG.ENS81.R234.137830-142631

Location

R234 [139,621 / 141,269]

Sequences

Amino acid sequence

Length: 189

>Cisavi.CG.ENS81.R234.137830-142631.02975.p
CMLFQLSEYKVVGRKLPSDAVPNPPLYRMRLFAPNHIAAKSRFCTAAISKCLTACAYYIS
YYKKIKKNAGEILQCSKRSEKRPGRVKNFGIWLRYDSRSGTHNMYREYRDVKVASAVTAC
YRDMGARHRARPGSIQIMRVEEVAANKCKRKHVQQFHDSKIKFPMRRTVLSKKRQNAPRF
TANKPNLFF

Nucleotide sequence

Length: 591

>Cisavi.CG.ENS81.R234.137830-142631.02975.t
TGTATGTTGTTTCAGCTGAGTGAATACAAGGTTGTGGGGCGTAAACTCCCATCCGACGCC
GTCCCCAACCCACCCTTGTATCGCATGCGATTGTTCGCACCAAACCATATCGCTGCAAAG
TCAAGATTCTGTACCGCTGCAATTTCAAAATGCCTCACTGCATGTGCGTATTACATTTCT
TACTACAAGAAGATCAAGAAGAATGCTGGTGAAATCCTTCAATGCAGCAAACGCTCGGAG
AAACGGCCGGGTCGGGTAAAGAACTTCGGAATCTGGTTGAGATACGACTCGCGTAGTGGA
ACACACAACATGTACAGGGAATACCGCGACGTTAAAGTTGCAAGCGCCGTGACTGCATGT
TACCGTGACATGGGAGCTCGACATCGTGCAAGACCTGGTTCCATACAAATCATGCGTGTG
GAAGAAGTCGCTGCCAACAAGTGCAAGCGAAAGCACGTGCAGCAGTTCCACGATTCGAAA
ATTAAATTCCCGATGCGAAGAACAGTGCTAAGCAAAAAGCGACAAAACGCTCCGCGCTTT
ACCGCCAATAAACCAAATCTGTTCTTCTAAGAATTGAACAGAAACTTCATA

InterProScan

PIRSF	Ribosomal_L18a/L20_eukaryotes (IPR021138) - T[2-189] 3.2E-59
PANTHER	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[6-189] 1.8E-74
Pfam	Ribosomal_L18a//L18Ae/LX (IPR023573) - T[7-141] 3.5E-46
Hamap	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[29-141] 31.435

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL18A_HUMAN	64.13 %	236	1.43E-80