Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R234.137830-142631.02974.t

Possible name(s)

RPL18A

Gene model

Cisavi.CG.ENS81.R234.137830-142631

Location

R234 [139,614 / 142,631]

Sequences

Amino acid sequence

Length: 178

>Cisavi.CG.ENS81.R234.137830-142631.02974.p
MKAKGELSEYKVVGRKLPSDAVPNPPLYRMRLFAPNHIAAKSRFWYYISYYKKIKKNAGE
ILQCSKRSEKRPGRVKNFGIWLRYDSRSGTHNMYREYRDVKVASAVTACYRDMGARHRAR
PGSIQIMRVEEVAANKCKRKHVQQFHDSKIKFPMRRTVLSKKRQNAPRFTANKPNLFF

Nucleotide sequence

Length: 598

>Cisavi.CG.ENS81.R234.137830-142631.02974.t
TTTTCTTTTTGGTTGTTTCTTAAGCCCAGTAACATGAAGGCAAAGGGAGAGCTGAGTGAA
TACAAGGTTGTGGGGCGTAAACTCCCATCCGACGCCGTCCCCAACCCACCCTTGTATCGC
ATGCGATTGTTCGCACCAAACCATATCGCTGCAAAGTCAAGATTCTGGTATTACATTTCT
TACTACAAGAAGATCAAGAAGAATGCTGGTGAAATCCTTCAATGCAGCAAACGCTCGGAG
AAACGGCCGGGTCGGGTAAAGAACTTCGGAATCTGGTTGAGATACGACTCGCGTAGTGGA
ACACACAACATGTACAGGGAATACCGCGACGTTAAAGTTGCAAGCGCCGTGACTGCATGT
TACCGTGACATGGGAGCTCGACATCGTGCAAGACCTGGTTCCATACAAATCATGCGTGTG
GAAGAAGTCGCTGCCAACAAGTGCAAGCGAAAGCACGTGCAGCAGTTCCACGATTCGAAA
ATTAAATTCCCGATGCGAAGAACAGTGCTAAGCAAAAAGCGACAAAACGCTCCGCGCTTT
ACCGCCAATAAACCAAATCTGTTCTTCTAAGAATTGAACAGAAACTTCATACTTGAAA

InterProScan

PANTHER	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[1-178] 1.2E-83
PIRSF	Ribosomal_L18a/L20_eukaryotes (IPR021138) - T[1-178] 1.3E-66
Pfam	Ribosomal_L18a//L18Ae/LX (IPR023573) - T[8-130] 1.1E-50
Hamap	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[30-130] 35.841

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL18A_HUMAN	69.101 %	259	1.5E-89