Aniseed - Transcript Card

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R234.137830-142631.02973.t

Possible name(s)

RPL18A

Gene model

Cisavi.CG.ENS81.R234.137830-142631

Location

R234 [137,865 / 141,386]

Sequences

Amino acid sequence

Length: 179

>Cisavi.CG.ENS81.R234.137830-142631.02973.p
MHKQIENSFKSRNEYKVVGRKLPSDAVPNPPLYRMRLFAPNHIAAKSRFWYYISYYKKIK
KNAGEILQCSKRSEKRPGRVKNFGIWLRYDSRSGTHNMYREYRDVKVASAVTACYRDMGA
RHRARPGSIQIMRVEEVAANKCKRKHVQQFHDSKIKFPMRRTVLSKKRQNAPRFTANKP

Nucleotide sequence

Length: 537

>Cisavi.CG.ENS81.R234.137830-142631.02973.t
ATGCATAAACAAATAGAAAATTCGTTTAAATCAAGGAATGAATACAAGGTTGTGGGGCGT
AAACTCCCATCCGACGCCGTCCCCAACCCACCCTTGTATCGCATGCGATTGTTCGCACCA
AACCATATCGCTGCAAAGTCAAGATTCTGGTATTACATTTCTTACTACAAGAAGATCAAG
AAGAATGCTGGTGAAATCCTTCAATGCAGCAAACGCTCGGAGAAACGGCCGGGTCGGGTA
AAGAACTTCGGAATCTGGTTGAGATACGACTCGCGTAGTGGAACACACAACATGTACAGG
GAATACCGCGACGTTAAAGTTGCAAGCGCCGTGACTGCATGTTACCGTGACATGGGAGCT
CGACATCGTGCAAGACCTGGTTCCATACAAATCATGCGTGTGGAAGAAGTCGCTGCCAAC
AAGTGCAAGCGAAAGCACGTGCAGCAGTTCCACGATTCGAAAATTAAATTCCCGATGCGA
AGAACAGTGCTAAGCAAAAAGCGACAAAACGCTCCGCGCTTTACCGCCAATAAACCA

InterProScan

PIRSF	Ribosomal_L18a/L20_eukaryotes (IPR021138) - T[8-179] 4.0E-65
PANTHER	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[12-179] 6.6E-79
Pfam	Ribosomal_L18a//L18Ae/LX (IPR023573) - T[13-135] 1.6E-50
Hamap	50S_L18Ae/Ribosomal_L18a/L20 (IPR028877) - T[35-135] 35.841

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
RL18A_HUMAN	69.277 %	243	2.84E-83