- Transcript 'KH2012:KH.L40.13.v1....' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R21....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R21.1343975-1351473.08378.t
Possible name(s)
LHX1; LHX5
Gene model
Location
R21 [1,343,974 / 1,351,473]
Amino acid sequence
Length: 391
>Cisavi.CG.ENS81.R21.1343975-1351473.08378.p
MEPNYCSGCHSPVQEQFIYQIDDKFWHNDCVVCTDCQCPLSERCYVRNGELFCNNHFYSR
FGKKCHGCRGTIYPNDLVHKVESSTYHRNCFSCTTCHSRLEPGMPFYFTQERGLLYSEED
IWSECNSNAMSSDVTSSDVNHASPINENAKSLIEDRKLEEAWIGDRIDSTPSAAFEQRQT
GGEAEQSPIQQTEDIGAVEVSSPPPVQACLAITGTKRRGPRTTIKAKQLETLKNAFLNTP
KPTRHIREKLAQDTGLTMRVIQVWFQNRRSKERRIKQLNSMVARRHYFNSHALWFDICCD
QQYYQPQQPPHQQQNYFLQSPNPNFQDCHLSPAEPIEHQTWRPRVEDAPQIYHDNDVIYD
DSHNGGFSVYAPLERQACEHPNKTLLFWNQA
Nucleotide sequence
Length: 1,176
>Cisavi.CG.ENS81.R21.1343975-1351473.08378.t
ATGGAGCCAAATTATTGTTCGGGATGTCACTCGCCGGTGCAAGAACAATTTATATATCAG
ATTGACGACAAGTTCTGGCATAACGATTGTGTCGTGTGTACTGATTGCCAATGCCCATTG
TCAGAGCGTTGTTACGTCAGAAATGGAGAATTGTTTTGCAACAACCATTTTTACAGTCGA
TTCGGTAAGAAATGCCATGGATGTCGTGGAACAATCTACCCTAATGACCTCGTGCACAAA
GTCGAGTCGTCGACGTATCATCGCAACTGCTTCAGTTGTACCACTTGTCACTCTAGATTG
GAACCCGGCATGCCTTTCTACTTCACCCAGGAGCGCGGCTTGCTTTATTCGGAGGAAGAC
ATTTGGAGTGAATGCAATTCGAACGCCATGTCTAGTGACGTCACTAGTAGTGACGTCAAT
CACGCGTCACCCATAAATGAAAACGCGAAATCGTTAATCGAGGACCGAAAGTTGGAAGAG
GCTTGGATTGGAGATCGGATCGATTCGACGCCTTCGGCCGCGTTTGAGCAACGACAAACC
GGCGGGGAAGCCGAGCAGTCCCCGATCCAACAGACAGAAGATATCGGCGCAGTCGAAGTG
TCGTCCCCACCACCAGTGCAGGCTTGTTTAGCCATAACCGGTACCAAGCGACGCGGACCT
CGAACAACTATCAAGGCGAAACAGCTTGAGACGCTGAAAAATGCCTTTCTTAACACGCCG
AAGCCGACACGACATATCAGAGAGAAATTAGCGCAAGACACTGGCTTGACCATGCGTGTT
ATACAGGTTTGGTTCCAAAATAGACGAAGTAAAGAGCGCAGAATAAAACAATTGAATTCA
ATGGTAGCACGACGCCATTACTTCAACAGTCACGCCCTTTGGTTCGACATCTGCTGTGAC
CAACAATACTATCAACCGCAACAACCGCCGCACCAGCAACAAAATTACTTTCTTCAATCG
CCCAACCCAAACTTCCAGGATTGCCACTTATCACCCGCCGAGCCGATTGAACATCAAACA
TGGAGGCCTCGGGTCGAAGATGCTCCCCAAATATATCACGATAATGACGTCATTTATGAC
GATTCTCATAATGGGGGATTTTCGGTTTATGCACCGCTGGAAAGACAGGCGTGCGAACAT
CCAAACAAAACGTTGTTATTCTGGAATCAAGCATAG
| ProSiteProfiles |
Znf_LIM (IPR001781) - T[4-63] 13.246 - T[64-127] 8.969 |
| SMART |
Znf_LIM (IPR001781) - T[5-56] 1.8E-10 - T[64-120] 2.7E-8 |
| Pfam |
Znf_LIM (IPR001781) - T[6-61] 6.0E-12 - T[65-122] 6.5E-11 |
| ProSitePatterns |
Znf_LIM (IPR001781) - T[6-40] . - T[65-100] . |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[203-276] 4.23E-20 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[215-275] 18.414 |
| SMART |
Homeobox_dom (IPR001356) - T[217-279] 1.4E-21 |
| Pfam |
Homeobox_dom (IPR001356) - T[218-274] 1.9E-19 |
| CDD |
Homeobox_dom (IPR001356) - T[218-276] 2.3368E-20 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[250-273] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LMX1B_HUMAN | 27.989 % | 137 | 1.11E-36 |
| LHX5_HUMAN | 42.958 % | 230 | 6.75E-72 |
| LHX1_HUMAN | 41.958 % | 224 | 1.69E-69 |