- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R21....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R21.1309484-1324533.08354.t
Possible name(s)
HNRNPL; HNRNPLL
Gene model
Location
R21 [1,309,483 / 1,324,533]
Amino acid sequence
Length: 441
>Cisavi.CG.ENS81.R21.1309484-1324533.08354.p
MSFEEHAVKRRRLSENGSDVKEDYAEDRLEREHKFTRERDLPAPDQPNKVLLFTVVNPIY
PITTDVLHTICEPCGEVMRIVIFRKRGVQAMIEFNSIQSAQRAKASLNGADIYSGCCTLK
IEWAKPARLNVYKNDEETWDYTGAVGGEPPMPVQPALLGDAPAGYGNPPPFRAGKISMPA
PTQRGRGGMRGGRPPMTRPHRPSPGILPNHQMNNEFINEDYGHHMDSSSPVLMVYGLNPE
KMTCDRVFNILCLYGNVIKVKFLKSKPGTAMVQLGDPSSVGRAISNLSGMKFFEEKLVLA
PSKQLYLADTGAVGDLANGSPAQVDYSNSRNNRFQTNEQAAKNRIQNPSKILHYYNAPLE
FSEDKMQEICKEFDLTNPAKFTPFKTKSDRSTSGLMEQRIQSSQAMEVLTYANHYKLDNP
AGRFPYVLKLCFSTASSTTRD
Nucleotide sequence
Length: 1,427
>Cisavi.CG.ENS81.R21.1309484-1324533.08354.t
TTTTATAAATCCAAATATGTCGTTCGAAGAACACGCAGTAAAGCGCAGAAGACTGAGTGA
AAATGGTTCGGATGTTAAGGAAGACTACGCTGAAGATAGATTGGAAAGAGAACATAAATT
CACTCGTGAGCGAGACTTACCAGCACCAGATCAACCAAACAAAGTTTTGCTTTTCACTGT
TGTCAACCCAATATATCCGATCACTACAGATGTGCTTCACACCATTTGTGAGCCGTGTGG
GGAAGTTATGCGGATTGTGATCTTTCGTAAACGTGGTGTGCAAGCCATGATTGAATTCAA
TTCCATCCAATCTGCTCAACGAGCCAAAGCATCACTCAATGGAGCCGATATCTACTCTGG
TTGCTGTACTCTCAAGATTGAATGGGCCAAGCCGGCTCGCTTGAATGTTTACAAAAATGA
TGAGGAGACCTGGGATTATACTGGAGCTGTCGGAGGGGAACCCCCGATGCCCGTGCAACC
AGCTTTGTTAGGAGACGCCCCGGCAGGCTATGGAAACCCCCCACCTTTTCGAGCTGGTAA
GATTAGCATGCCGGCCCCGACTCAGCGGGGCAGGGGAGGAATGAGGGGAGGAAGACCCCC
TATGACCCGACCCCACCGACCATCTCCTGGCATCCTTCCTAACCATCAGATGAATAATGA
GTTCATCAATGAGGATTACGGACATCATATGGACAGCAGCAGTCCAGTACTCATGGTGTA
CGGACTCAATCCTGAAAAGATGACATGCGACCGTGTGTTTAACATTCTGTGTCTCTATGG
AAATGTTATAAAAGTGAAATTCCTGAAAAGCAAGCCCGGCACAGCCATGGTGCAATTGGG
AGACCCAAGCTCTGTGGGAAGAGCCATCTCTAATCTCTCCGGGATGAAATTCTTTGAAGA
GAAACTGGTCTTGGCGCCATCAAAGCAGTTATACTTGGCCGACACTGGGGCAGTTGGAGA
TCTTGCAAATGGTTCCCCAGCTCAGGTGGATTACAGTAACTCACGAAACAACAGGTTCCA
GACCAACGAGCAAGCTGCAAAGAACCGGATTCAAAACCCGTCGAAGATCTTGCATTATTA
CAATGCTCCACTGGAGTTTAGTGAGGACAAAATGCAAGAGATTTGCAAAGAGTTTGATTT
GACAAATCCAGCTAAGTTCACACCGTTTAAGACCAAAAGCGACAGAAGCACATCTGGTTT
GATGGAGCAACGCATTCAAAGCTCGCAGGCCATGGAAGTGCTCACGTATGCCAACCACTA
TAAGCTCGACAATCCAGCTGGAAGATTCCCATACGTTCTCAAGCTTTGCTTCTCCACTGC
GAGTTCGACAACCAGGGATTGAACGAAACCAACATTTTGTGCTGAAATTGACAATTTGTA
CCATTGGTAGCCGTCTCGAGTACATCGTGTGGATTTCCCATGTAGTA
| TIGRFAM |
HnRNP-L/PTB (IPR006536) - T[43-436] 2.9E-118 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[45-145] 1.7E-38 - T[226-340] 8.6E-25 - T[341-432] 2.9E-27 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[49-126] 8.518 - T[230-304] 9.49 |
| SMART |
RRM_dom (IPR000504) - T[50-120] 8.1E-5 - T[231-300] 6.7E-5 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[60-138] 3.12E-16 - T[190-300] 3.66E-11 |
| Pfam |
RRM_dom (IPR000504) - T[62-113] 3.8E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PTBP1_HUMAN | 29.755 % | 119 | 2.82E-29 |
| HNRPL_HUMAN | 52.941 % | 399 | 1.09E-134 |
| HNRLL_HUMAN | 43.204 % | 324 | 3.51E-106 |