- Molecular Tool 'ciad14f10-MO (Hamada's MO)' >
- Transcript 'Cisavi.CG.ENS81.R9.2...' >
- Transcript 'Cisavi.CG.ENS81.R19....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R19.651241-652635.11361.t
Possible name(s)
LEMD3; RBM23; RBM39
Gene model
Location
R19 [651,240 / 652,635]
Amino acid sequence
Length: 465
>Cisavi.CG.ENS81.R19.651241-652635.11361.p
MTDDIDVEAMLEAPFQKSSEKEEKKKSEKKSRKRSRSRSRSKGRRRRKSRSRSRDRRRHS
RKRSRSRKRSRSRERRRRSRSPRRSPRKISPPKPRSPSPPDRDARTIFCMQLAQRIRIRD
LEEFFSSVGKVRDVKLIQDKHSKRSKGIAYVEFKDLESIPLALGLSGQKLLGVPIIVQPT
QSEKNKVAAAQLSLQKAALGPTKLYVGSLHENITEDMIKGIFSPFGRVEQVEIVKDVSGL
SRGYGFVTFAEAECAKRALDQLNGFEIAGKPIKLNTVSYGADLNALQALANAPSFLDNDA
VERAGIDLGTTGRLQLMAKLAEGTGLEVPSAAQQALYLGQSMGLGLPNSSAPPSSGQPPI
ATTCFQLSNMFDPTQESGSNWDKEIRDDVIEECQRHGSVFHVFVDKQSKGNVYVKCDSVN
AAANSVAALHGRYFAGNMITAAYVPVVNYHSLFPEAAYANTPLQT
Nucleotide sequence
Length: 1,395
>Cisavi.CG.ENS81.R19.651241-652635.11361.t
ATGACGGACGACATTGATGTTGAGGCCATGCTCGAGGCGCCGTTCCAAAAAAGTTCTGAG
AAAGAAGAGAAGAAAAAGAGCGAGAAAAAGTCAAGGAAACGAAGTCGCAGTAGAAGTCGA
AGCAAAGGAAGAAGGCGGCGAAAATCTCGATCAAGATCTCGCGACCGAAGAAGGCACAGT
CGGAAGAGAAGTCGCTCTCGCAAACGAAGCAGATCTAGAGAACGTCGACGCCGATCCAGG
TCTCCAAGAAGAAGTCCAAGAAAGATCTCTCCTCCAAAACCGCGATCACCAAGTCCACCA
GATCGAGATGCCAGAACCATCTTCTGCATGCAACTTGCTCAGAGGATCAGGATTCGAGAT
CTTGAAGAGTTCTTTTCTTCAGTTGGGAAAGTCCGTGACGTGAAATTGATCCAGGATAAA
CACTCCAAACGTTCGAAAGGAATTGCTTATGTTGAATTTAAAGATCTAGAATCAATTCCG
CTGGCACTGGGACTTAGTGGTCAGAAATTGCTGGGAGTCCCAATAATTGTACAGCCCACA
CAGTCGGAGAAAAATAAAGTTGCAGCTGCTCAGCTTAGTTTACAGAAAGCAGCTCTCGGC
CCTACCAAATTGTATGTTGGTTCTTTACATGAAAATATCACAGAAGATATGATTAAAGGA
ATCTTTTCGCCATTCGGTAGGGTTGAACAGGTTGAAATTGTCAAAGATGTCTCTGGTTTG
TCGCGTGGGTATGGTTTCGTCACATTTGCAGAGGCTGAGTGTGCAAAGCGAGCTTTGGAT
CAACTCAATGGGTTTGAAATTGCTGGAAAGCCGATCAAACTAAACACAGTTAGTTACGGG
GCAGATTTGAATGCACTGCAAGCTCTCGCAAATGCACCTTCTTTCCTTGATAATGATGCA
GTTGAGAGAGCAGGTATTGATCTAGGCACAACAGGCAGATTACAACTAATGGCGAAACTG
GCTGAAGGCACAGGATTGGAAGTTCCATCTGCGGCACAGCAGGCTTTGTATCTCGGGCAA
TCCATGGGGCTGGGGCTACCGAACAGCAGTGCCCCTCCAAGTTCAGGACAACCCCCTATT
GCAACCACTTGTTTTCAACTCTCCAATATGTTCGACCCCACTCAAGAATCTGGCTCAAAT
TGGGATAAAGAAATTCGCGATGATGTGATTGAAGAATGTCAGCGTCATGGGAGCGTTTTC
CATGTTTTTGTTGACAAACAATCAAAGGGAAATGTGTACGTAAAATGCGACAGTGTCAAC
GCGGCTGCAAACTCTGTGGCTGCCCTGCACGGTCGCTATTTTGCTGGGAATATGATTACT
GCTGCTTATGTTCCTGTGGTAAACTACCACTCACTCTTTCCTGAAGCAGCATATGCTAAC
ACTCCATTACAGACC
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[12-191] 6.1E-23 - T[196-287] 4.6E-24 - T[357-465] 6.2E-30 |
| TIGRFAM |
RBM39_SF (IPR006509) - T[19-454] 3.2E-139 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[50-179] 6.99E-23 - T[201-289] 6.79E-30 - T[371-443] 6.79E-30 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[105-182] 14.641 - T[202-279] 19.707 |
| SMART |
RRM_dom (IPR000504) - T[106-178] 1.0E-14 - T[203-275] 8.4E-26 - T[364-442] 1.7 |
| Pfam |
RRM_dom (IPR000504) - T[107-172] 4.6E-11 - T[204-273] 2.2E-21 |
| Pfam |
RBM39_linker (IPR029123) - T[299-381] 3.4E-23 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MAN1_HUMAN | 39.286 % | 103 | 1.84E-23 |
| RBM39_HUMAN | 56.265 % | 462 | 5.26E-160 |
| RBM23_HUMAN | 43.274 % | 317 | 3.35E-104 |