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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.S654.1.v1....'
  2. Molecular Tool 'pFT::dnCi-FGFR'
  3. Transcript 'Cisavi.CG.ENS81.R19....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R19.3883332-3905930.18482.t

Possible name(s)

RBPJ; RBPJL

Location

R19 [3,891,542 / 3,905,930]

Sequences

Amino acid sequence

Length: 485

>Cisavi.CG.ENS81.R19.3883332-3905930.18482.p
RSLREKWPPKRLTREAMRRYLKEPNDQTLTVLHAKVAQKSYGNEKRFFCPPPCMYLLGNG
WKRKQQTLEEEEGSVEAGQVHAFIGIGSSEQEMQQLHLDGKNFCTAKTLYISDTDKRKHF
MLNVKMFFGKGADVGQFCSKRIKVISKPSKKKQSLKNADLCIASGTKVALFNRLRSQTVS
TRYLHVEKGNFHASSIQWGCFAIHLLDDDESESEEFSVMDGYIHYGQTVKLVCSNTGMAL
PRLIIRKVDKQTAILDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEANK
EMINDGASWTIISTDKAEYTFCDGMGPTADPVTPVPNVHSLQLNGGGDVAMLEVNGECFT
SNLKVWFGEIEADTMFRCAEGLLCVVPDISAFREGWKWVKESVQVPINLVRNDGVIYPTN
LTFTFTPEPGPRQHCPAALSILHGTKRPPTSMPPTPVSGSEDDGGRGNESDRGEPTTPLK
RPALD

Nucleotide sequence

Length: 2,002

>Cisavi.CG.ENS81.R19.3883332-3905930.18482.t
AGGTCCTTGCGGGAAAAATGGCCGCCGAAAAGATTGACACGGGAAGCGATGCGACGATAC
TTGAAAGAACCGAACGACCAAACGCTCACAGTGCTTCACGCAAAAGTGGCGCAGAAGTCA
TACGGAAACGAAAAACGGTTCTTCTGTCCTCCCCCATGCATGTATCTCCTGGGCAATGGC
TGGAAGAGAAAGCAGCAAACCTTGGAGGAGGAAGAGGGCTCCGTGGAGGCGGGGCAAGTC
CATGCTTTCATCGGGATCGGGAGCAGCGAGCAAGAGATGCAGCAACTTCATTTGGATGGG
AAGAACTTCTGCACCGCCAAGACGTTGTACATATCCGACACTGACAAGCGAAAACACTTT
ATGCTCAACGTGAAGATGTTCTTCGGCAAAGGTGCTGATGTGGGTCAGTTCTGTAGCAAG
CGGATCAAAGTGATCAGCAAACCTTCAAAGAAGAAACAGTCGCTGAAGAACGCCGACTTG
TGCATCGCATCTGGCACGAAAGTGGCTTTGTTCAACAGACTTCGCTCCCAGACAGTGAGC
ACGAGGTATTTGCACGTGGAAAAGGGAAACTTCCACGCGAGCTCTATACAGTGGGGCTGC
TTCGCCATTCATTTGCTCGACGACGACGAATCGGAATCGGAGGAATTCTCAGTGATGGAC
GGATACATCCACTATGGACAAACCGTCAAGTTGGTGTGTTCCAACACTGGGATGGCTCTA
CCTCGACTCATAATACGAAAGGTGGACAAACAGACGGCGATATTGGACGCGGACGACCCG
GTCTCCCAACTGCACAAGTGCGCCTTCTACTTGAAAGATACGGAACGAATGTATCTCTGT
CTCTCTCAGGAGCGGATTATACAGTTTCAGGCCACCCCATGCCCCAAGGAAGCCAACAAA
GAAATGATCAACGACGGGGCCTCGTGGACCATCATCTCAACCGACAAGGCTGAATATACA
TTCTGCGATGGAATGGGACCGACCGCTGACCCAGTAACCCCGGTACCCAACGTCCATAGT
TTGCAGTTAAACGGCGGAGGCGACGTTGCAATGCTGGAAGTGAACGGGGAATGTTTTACG
TCCAACCTCAAAGTATGGTTCGGCGAGATAGAAGCCGACACGATGTTCAGATGCGCCGAG
GGACTCCTGTGTGTTGTCCCCGACATATCGGCGTTCAGGGAGGGATGGAAGTGGGTCAAA
GAGTCGGTCCAGGTCCCGATCAACCTTGTAAGGAACGACGGGGTGATTTACCCCACCAAC
CTTACCTTTACTTTCACCCCTGAACCCGGCCCCAGGCAGCACTGCCCCGCTGCGCTTAGT
ATACTCCATGGGACCAAGCGGCCCCCCACTTCCATGCCCCCAACCCCCGTTTCCGGCTCC
GAGGACGACGGGGGCCGCGGGAACGAGTCGGACAGGGGCGAACCCACCACGCCCCTTAAA
CGCCCCGCGCTGGACGTGCACGGACGGCCCATGGCGCCCGACGCGTCCGCGACTATGAAC
GGCGTCAATATGCTCAGGACGGCATCGTGACGTCAATTTACAGCCTATGACGTCATAAAA
CACGCCAAACAGTTGGCGGGAAGGAATGCAGTCCACGGAAGAGAGAGCTTGTTAGTACCA
CTGGCGAAATTAACACGCGATTACGTCACGTGATGACGTCAGAGAACCGGATGTTACCTC
ATAACCACAACGCTGCGTGGGCGATACGGTCCCCTGATTTATCTCAAGCCTCCAGCTTAA
ACCAATGTCGCTCAAACTTATCTTCAATTCAACCCCCGTCTGCCCACCAACCCACACCAG
TAGATATAGAACCGACTCCTACCTCAGTTTAAAGGAAAGAACCACGATTTTGAATATTGG
GGTGGTTCAAATCACGACCATCGCTCCGTTTAAAGAGTTCAAAATTACGCGTCCATTTTT
TGTTTGTTTTTCTTCGTGTACCATCCTTTTGTTTTTAATTTGTGTCAATTTTCATGGCGC
TTATTTATCTACTAGCTTCAGC

InterProScan

SUPERFAMILY
p53-like_TF_DNA-bd (IPR008967) - T[11-159] 6.71E-60
Gene3D
RBP-J/Cbf11/Cbf12_DNA-bd_sf (IPR037095) - T[12-155] 5.7E-166 - T[314-334] 5.7E-166
SMART
RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[28-159] 3.0E-82
Pfam
RBP-J/Cbf11/Cbf12_DNA-bd (IPR015351) - T[29-159] 5.2E-49
SUPERFAMILY
BTD_sf (IPR036358) - T[157-314] 2.35E-64
Pfam
Beta-trefoil_DNA-bd_dom (IPR015350) - T[160-309] 1.6E-72
SMART
Beta-trefoil_DNA-bd_dom (IPR015350) - T[160-309] 1.3E-88
SUPERFAMILY
Ig_E-set (IPR014756) - T[315-427] 2.8E-35
CDD
RBP-Jkappa_IPT (IPR038007) - T[331-427] 4.61483E-62
Gene3D
Ig-like_fold (IPR013783) - T[336-429] 9.9E-39

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SUH_HUMAN 77.586 % 755 0
RBPJL_HUMAN 51.802 % 473 5.15E-164