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TRANSCRIPT CARD

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  1. Clone 'cima839980' > 
  2. Transcript 'Cisavi.CG.ENS81.R16....' > 
  3. Transcript 'Cisavi.CG.ENS81.R16....' > 
  4. Transcript 'Cisavi.CG.ENS81.R16....' > 
  5. Transcript 'Cisavi.CG.ENS81.R19....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R19.1285907-1287472.13816.t

Possible name(s)

GSX1; GSX2; HOXC4

Gene model

Cisavi.CG.ENS81.R19.1285907-1287472

Location

R19 [1,285,906 / 1,287,472]

Sequences

Amino acid sequence

Length: 342

>Cisavi.CG.ENS81.R19.1285907-1287472.13816.p
MLQDLVQSSHLPKMQVNKKGEASRHSFSIESLMKTSSSRHNYDSDERSRTSTSPEATISR
TSETKSPESRSRAITPPTGAQFSPTSLSQGSLQDNAPSPLHSAGNSTALSQYYPHHCTRG
SPVHETTGFQGNISPPGYLNALKRFSQQNYSWNDRAAAALVTFSVFGGNLGQWQVTSPKY
QQNHERAVPDFQHAHQYPRDHITPPSRVPYHSDIGVHYSADRPQTTNNSRSTYQHSLPQP
TIEAAAAASRVTPDVAAMETSSSREDDDQTDRKRMRTAFTGNQLLELEREFHNDMYLTRL
RRIRIAQTLNLSEKQIKIWFQNRRVKQKKGEKPGCADDMSKF

Nucleotide sequence

Length: 1,036

>Cisavi.CG.ENS81.R19.1285907-1287472.13816.t
AGAACGAAGAATGCTGCAAGATCTAGTTCAATCCAGCCACTTACCGAAGATGCAAGTGAA
CAAGAAGGGAGAGGCATCACGTCACTCCTTCTCTATCGAATCGCTGATGAAGACGTCATC
ATCACGTCATAATTACGATAGTGACGAGAGATCTAGGACTTCTACTAGTCCAGAGGCAAC
GATTTCTAGAACAAGTGAAACAAAATCCCCCGAATCGAGAAGCAGGGCAATCACACCACC
AACCGGTGCACAGTTTTCCCCAACTTCACTTTCGCAAGGAAGTCTACAAGATAACGCGCC
TTCTCCGCTACATAGTGCCGGAAACTCGACCGCCCTCAGCCAGTACTACCCACATCATTG
TACCAGGGGATCTCCCGTACATGAGACCACCGGTTTTCAGGGTAATATTTCCCCGCCCGG
CTATCTCAACGCTCTGAAGCGTTTCTCGCAGCAGAATTACTCGTGGAACGACCGGGCAGC
AGCGGCGCTTGTCACCTTCTCTGTTTTCGGAGGGAACCTTGGTCAGTGGCAAGTCACCAG
TCCGAAGTACCAGCAGAACCACGAACGAGCGGTTCCTGATTTTCAACACGCACACCAATA
TCCGCGTGACCATATAACACCACCCAGCAGAGTACCGTACCATTCAGATATCGGCGTGCA
TTACTCCGCAGATCGCCCACAAACCACTAATAACAGCCGTTCCACGTACCAACATAGCCT
GCCACAGCCAACCATCGAAGCAGCCGCAGCAGCAAGCAGAGTCACTCCGGATGTTGCTGC
CATGGAAACCTCCTCTTCTAGAGAAGACGATGATCAGACCGACCGCAAACGAATGCGAAC
CGCCTTCACAGGCAACCAGCTCCTTGAACTTGAACGCGAGTTCCACAACGACATGTACCT
GACGCGACTCCGCCGAATAAGGATCGCCCAGACCCTCAACCTCTCCGAGAAACAAATCAA
AATCTGGTTCCAGAATCGCAGAGTCAAACAAAAGAAGGGAGAGAAGCCAGGTTGTGCAGA
TGACATGTCAAAATTC

InterProScan

SUPERFAMILY
Homeobox-like_sf (IPR009057) - T[260-331] 3.89E-24
ProSiteProfiles
Homeobox_dom (IPR001356) - T[270-330] 21.135
SMART
Homeobox_dom (IPR001356) - T[272-334] 3.3E-26
CDD
Homeobox_dom (IPR001356) - T[273-331] 1.16271E-21
Pfam
Homeobox_dom (IPR001356) - T[273-329] 1.0E-20
PRINTS
Homeobox_metazoa (IPR020479) - T[294-305] 1.4E-5 - T[309-319] 1.4E-5 - T[319-328] 1.4E-5
ProSitePatterns
Homeobox_CS (IPR017970) - T[305-328] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
HXC4_HUMAN 50 % 90.5 5.88E-21
GSX1_HUMAN 78.333 % 102 3.99E-25
GSX2_HUMAN 78.333 % 101 1.36E-24