- Transcript 'Cisavi.CG.ENS81.R165...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R165.331411-344357.14697.t
Possible name(s)
VPS11; VPS18
Gene model
Location
R165 [331,410 / 344,354]
Amino acid sequence
Length: 851
>Cisavi.CG.ENS81.R165.331411-344357.14697.p
QWRRFTFFNKQSIPATTSGRSWETLRNIEITCSTCGRGSLIFGDILCSRFHGLVHIVNHN
FQVSTFKAFEITLLHLFQLKLHNVLAAVGIDETGINPVIKVWNMDKRDKNGNPFCGRVQS
TIPANNQPSMVTSFCVHENQALMAVGFAMGSVALYKGDIAKDSQNKTIHLSIESDARITG
LSFHGVGKSSHLFATTEDLVVSFNLQDKVPKKNILDHRGCQVLCSTLSDTAMDHQFIVAS
TDAVYAYQPDARGPAFAFEGEKWMAKWFNGYLVVVYKDKGRSSVPSSRWVGWKVGGSNPA
RLFPWLSLMIPTIGRLEPSYIIRKFLDAQQIRNLTFYLQAMHERGLANEDHTTLLLNCFT
KLKDVDNLNKFIMTPETELHFDVETAIRVCRQAGYYEHALQLAEKHHKHKWYLKIQLEDT
HQHRKALAYIRQLPFNEAENSVKRYGKALVTHVPEETTDLLKLLCTDYQPSKPTNPQLST
RSVSKSNGVDFIHIFVNSPDMLVKFLEHLIKVQDNAPETVYNTLLELYLQKLANPNEIKS
NSELESLALNLLKEISVKRYDTDQALLLCQMNDFRPGILFLYQACKLYQQILRYHMDHEA
HGLVVDTCRRYGGEDGALWQQALTYFAKQQGHHATNETIGSLTSHPHIEKHNLLPPLLVV
QLLSKNSTVTLGVVRDYILRRIRQESDEIENCEKSIADYQVETQEMKNKIEQLKTGATIF
QETRCSLCSFELELPTLHFLCQHAFHVHCFESYADNESECPVCLPKNQKILENLREQEQV
GIMALHEQFNNQLKRSSDGFSIIADYFSKGVFNKVTLLTDGDSSKPPIGGPRSHGIDPGL
QKELLMMQQAN
Nucleotide sequence
Length: 2,553
>Cisavi.CG.ENS81.R165.331411-344357.14697.t
CAATGGCGCCGATTCACTTTCTTCAACAAACAATCGATTCCGGCAACAACCTCCGGCCGA
TCGTGGGAAACGCTTCGCAACATAGAAATCACATGTTCCACCTGCGGCAGGGGAAGTCTA
ATATTCGGAGATATCCTTTGCTCACGATTTCATGGTCTGGTGCACATTGTGAACCACAAT
TTCCAAGTTTCAACTTTCAAGGCGTTTGAGATAACTCTGCTTCACTTGTTCCAGTTGAAG
CTTCATAATGTGCTTGCTGCTGTTGGGATTGATGAAACGGGGATCAATCCTGTCATCAAG
GTGTGGAACATGGACAAGAGAGACAAGAATGGAAATCCCTTCTGTGGTCGAGTGCAGAGC
ACCATCCCTGCCAACAACCAACCAAGCATGGTGACCTCGTTTTGTGTCCATGAAAACCAA
GCATTGATGGCCGTGGGGTTCGCCATGGGCTCTGTGGCTCTGTATAAAGGCGACATCGCT
AAGGACAGCCAGAACAAGACAATTCACTTATCCATTGAGAGTGACGCCCGAATCACGGGT
TTAAGTTTCCACGGTGTGGGAAAGTCATCACATTTATTCGCAACGACTGAAGATTTGGTC
GTTTCTTTCAATTTGCAGGACAAAGTACCGAAAAAAAACATATTGGATCATCGCGGATGC
CAAGTATTGTGCAGTACTTTGTCGGATACCGCGATGGATCATCAATTCATTGTGGCATCC
ACTGATGCTGTGTATGCATACCAACCTGATGCTAGAGGCCCTGCATTCGCATTTGAAGGT
GAGAAGTGGATGGCGAAGTGGTTCAATGGATACCTCGTCGTGGTGTACAAAGATAAAGGA
AGAAGTTCAGTTCCTTCATCCAGGTGGGTGGGTTGGAAGGTGGGGGGATCGAATCCTGCT
CGGTTGTTTCCTTGGCTCTCATTGATGATTCCAACCATCGGGCGCCTCGAACCTTCATAC
ATTATCAGGAAATTCCTGGACGCTCAGCAGATCCGCAACCTCACTTTCTACCTACAAGCG
ATGCACGAACGTGGACTCGCCAATGAGGACCATACCACCCTCCTCCTTAATTGCTTCACC
AAGTTGAAGGATGTGGACAATCTTAACAAGTTCATCATGACCCCGGAGACTGAACTTCAC
TTCGACGTGGAAACAGCGATTCGAGTTTGTCGACAAGCTGGTTATTACGAGCATGCCCTG
CAACTTGCTGAGAAGCATCACAAGCATAAATGGTATTTGAAGATCCAGCTTGAAGACACT
CACCAACATAGGAAAGCGTTGGCGTACATACGTCAACTCCCATTCAATGAGGCGGAAAAC
AGTGTGAAAAGATACGGGAAAGCTCTGGTGACGCATGTTCCTGAGGAAACAACGGATTTG
TTGAAGCTGCTGTGCACAGATTATCAACCAAGCAAACCAACCAATCCACAACTTTCAACT
CGGTCTGTGTCAAAGTCCAACGGTGTCGACTTCATTCACATATTCGTCAACAGTCCTGAC
ATGCTCGTTAAGTTCTTGGAACATTTGATCAAGGTTCAAGACAACGCTCCAGAGACGGTG
TATAATACTCTGTTGGAACTCTATCTCCAGAAACTTGCAAATCCCAATGAAATCAAGAGC
AACTCCGAGTTGGAAAGCCTTGCACTAAATCTCCTCAAAGAGATCTCGGTGAAGCGTTAC
GACACCGACCAAGCACTTCTGCTCTGCCAGATGAACGACTTCCGACCTGGTATATTATTT
CTATACCAGGCGTGCAAATTATACCAACAGATCCTACGCTACCACATGGACCACGAGGCG
CACGGACTGGTGGTCGATACGTGCAGGAGATACGGGGGGGAAGACGGCGCGTTGTGGCAG
CAAGCTCTCACTTACTTCGCCAAACAACAAGGACACCATGCAACCAACGAAACAATTGGT
TCCTTAACCTCCCATCCACATATCGAAAAGCACAACCTTCTACCACCACTGCTGGTTGTT
CAACTTCTCTCCAAGAATTCAACGGTTACGCTGGGGGTGGTTCGGGATTACATCCTGCGG
AGAATCCGACAAGAAAGCGATGAAATCGAGAACTGTGAGAAGTCGATCGCAGATTATCAG
GTGGAAACGCAGGAGATGAAGAACAAGATCGAACAACTCAAAACCGGCGCCACCATCTTC
CAAGAGACTCGATGCAGCCTCTGTTCATTTGAACTCGAGTTGCCGACGTTGCATTTCCTG
TGTCAGCATGCCTTCCATGTTCATTGCTTTGAGAGTTATGCAGACAACGAAAGTGAATGT
CCGGTTTGTTTGCCAAAGAATCAGAAAATCTTGGAGAATTTACGAGAACAAGAACAGGTG
GGAATCATGGCCCTCCACGAACAGTTCAACAACCAGTTGAAACGATCGTCAGACGGATTC
TCCATCATCGCAGATTACTTCTCTAAAGGAGTCTTCAACAAGGTCACCCTCCTTACTGAC
GGGGACTCGAGCAAACCACCGATTGGGGGTCCAAGGTCCCACGGAATTGACCCGGGGCTA
CAGAAGGAGCTGCTTATGATGCAACAAGCAAAC
| PIRSF |
VPS11 (IPR016528) - T[1-292] 2.0E-53 - T[307-489] 1.1E-66 - T[477-820] 9.7E-97 |
| PANTHER |
VPS11 (IPR016528) - T[1-281] 2.7E-246 - T[310-824] 2.7E-246 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[54-267] 1.7E-5 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[67-250] 7.99E-10 |
| ProSiteProfiles |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[309-458] 27.567 - T[477-635] 15.333 |
| Pfam |
Clathrin_H-chain/VPS_repeat (IPR000547) - T[316-433] 1.5E-10 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[316-558] 8.5E-7 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[692-801] 4.9E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[725-763] 10.335 |
| Pfam |
VPS11_C (IPR024763) - T[767-813] 9.4E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| VPS11_HUMAN | 51.391 % | 552 | 0 |
