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TRANSCRIPT CARD

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  1. Region 'REG00001480' > 
  2. Region 'REG00001448' > 
  3. Transcript 'Harore.CG.MTP2014.S6...' > 
  4. Transcript 'Cisavi.CG.ENS81.R16....'

Transcript Model

Transcript Id

Cisavi.CG.ENS81.R16.2236661-2241567.16204.t

Possible name(s)

LDLR; LRP1B; LRP8

Gene model

Cisavi.CG.ENS81.R16.2236661-2241567

Location

R16 [2,236,660 / 2,241,567]

Sequences

Amino acid sequence

Length: 373

>Cisavi.CG.ENS81.R16.2236661-2241567.16204.p
MLEAYINVFYTAGICLILAKGQDGSVLQHSAPKQNSTLGAFQPQQECKMLHTNVFQLDLG
CVLRRKSRTTAHALTAPSLAACKRVCCEYEEGPCDLVYYNRYHKCVVMNYHVLSLCPLMA
PTVSLPGSYSFTLLLSVTERVTPSLKQHLILKGYSSQIAQFLGCDRDSFVCNNWQCIDKK
YVCDDTPHCSDNSDESRCPQIIVAPRKMGCLSYHGDYVKNGEEYTPFGKADECQRCICGN
DSLPSYCYSATCNNVQLTNCDNNNPDICCVCHKSTIQNNDPSDDNSDIFVNLSGTQRLIV
SCMSVLVVVTLLLFFSRNLMHRARGAFMPNGGNHRGRSRNTWVPHPTHALPPTRPFMGRY
FTRNSSMSFVETD

Nucleotide sequence

Length: 1,185

>Cisavi.CG.ENS81.R16.2236661-2241567.16204.t
GTCTACAGAGAACAATTTACCACTTACTGAAGCGAACCATGATATTTTGTCAGTGAATTA
TCACAATGTTAGAAGCATATATAAATGTTTTCTATACTGCTGGGATTTGTTTAATTCTTG
CTAAGGGACAGGATGGAAGCGTCTTGCAGCATAGCGCACCTAAACAAAACAGCACTTTAG
GAGCTTTCCAACCACAGCAAGAATGTAAAATGCTGCACACCAACGTTTTTCAACTTGATC
TTGGCTGTGTTTTAAGAAGGAAATCGAGAACAACCGCACATGCATTGACAGCACCATCAC
TTGCAGCTTGCAAAAGGGTTTGCTGTGAGTACGAGGAGGGGCCTTGTGATTTGGTCTATT
ATAATAGGTACCACAAGTGCGTTGTGATGAATTATCATGTGCTCAGTCTTTGTCCACTTA
TGGCACCCACTGTTTCACTACCTGGTAGTTATTCCTTTACCTTGCTTTTAAGTGTCACTG
AAAGAGTCACCCCCTCTCTAAAACAACATTTAATTCTGAAGGGTTACAGCTCCCAAATTG
CACAGTTCTTGGGTTGTGACAGAGATTCGTTTGTTTGCAATAACTGGCAGTGTATCGATA
AAAAGTATGTGTGTGATGACACTCCCCACTGTTCAGATAATTCCGATGAAAGCCGATGCC
CTCAGATAATTGTGGCACCACGTAAAATGGGCTGTCTTTCCTACCACGGAGATTACGTTA
AGAATGGTGAAGAATATACACCATTTGGCAAGGCAGATGAATGTCAGAGATGTATATGTG
GCAATGACAGTTTGCCATCATACTGCTACTCCGCCACCTGTAACAATGTGCAGTTGACAA
ATTGTGACAACAACAATCCGGACATATGCTGCGTCTGCCACAAATCCACCATACAGAACA
ATGATCCCTCAGATGATAATTCTGACATTTTTGTGAATTTATCCGGAACCCAAAGGTTAA
TAGTGAGCTGTATGTCAGTGCTGGTTGTGGTTACACTCTTGCTGTTTTTCTCGCGAAACC
TCATGCACAGAGCAAGGGGTGCATTTATGCCCAATGGGGGTAATCATCGAGGAAGGAGTA
GAAATACATGGGTTCCTCATCCTACCCATGCGTTACCACCGACGCGACCGTTCATGGGTC
GCTACTTTACCAGGAACAGCAGCATGAGTTTTGTGGAAACTGATC

InterProScan

SUPERFAMILY
LDL_receptor-like_sf (IPR036055) - T[162-200] 1.44E-9
SMART
LDrepeatLR_classA_rpt (IPR002172) - T[163-200] 4.0E-6
ProSiteProfiles
LDrepeatLR_classA_rpt (IPR002172) - T[163-199] 11.738
Pfam
LDrepeatLR_classA_rpt (IPR002172) - T[164-198] 3.3E-8
CDD
LDrepeatLR_classA_rpt (IPR002172) - T[164-198] 3.54219E-8
ProSitePatterns
LDLR_class-A_CS (IPR023415) - T[176-198] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value