- Transcript 'Cisavi.CG.ENS81.R1.5...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R1.5792681-5806008.20206.t
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
R1 [5,793,444 / 5,806,008]
Amino acid sequence
Length: 942
>Cisavi.CG.ENS81.R1.5792681-5806008.20206.p
MITLFAVYGLAQNGNSQRMSKEIDLLKVSKTRISKRKINSDNINSALTLSNSVSILTNLR
IPPKEATLFIEIQAGNFEPFKKYLEINVEGHKGKVLVKYESGKDNNVVTFRNVWISDNQF
HTLVFHFDVISINAAKLTLLVDCLEYGSHVIEPWLSATLPNNFTTKSIVKIGRKYRGNLN
TFIQRALLISDLDLAFVRRNYIAVCSQSDRPDPSLLLNNYQPISELTVQLSDLTSILQNM
HHVMKEQILEARELRRAIQQCSLCKAEAPCSNIELKANCSEDPCYPGVECVDIDAGFECG
TCPLGYQGNGSNCTDIDECLNNPCSTQCMNTPGSYHCDPCPTGYDETIQDVNVDGLIIPT
QICSDYNECDVDNGGCVKFSICHNFPGKSTCGACIDGYTGNQTVGCKKIRHCSDGAVNPC
DINADCKVINTRERYSCTCRVGYAGNGFICGNDTDQDSFPDMRMPCHKKHCRKDNCPQVP
NSGQEDSDNDGFGDACDDDADNDGVPNHEDNCVLVANADQQNSDTDSFGDACDNCPNVSN
PKQHDTDGNGEGDKCDNDIDGDGISNNVDNCPYTPNYNQEDRDLDKIGDACDNCLSMSNS
LQTDTDNDLLGDMCDDDADADGDGYQNSIDNCPYVINNAQLDTDNDGIGDACDEDDDNDG
IPDYGINTGSDNCRLVYNPNQLDRDEDGVGDACEDDKDGDQVNDWRDACPENAEVTTTDF
RTFQSVTLDPKGDAQVDPHWVILNKGMEIVQTQNSDPGLAIGYDSFDGVDFSGTFFVNTA
TDDDYAGFIFSYQSSSRFYVVTWKQTEQTYWSATPFRAVAQPGLQLKAVNSNKGPGERMR
NALWHSSDTMGEVKVLWSDPINQGWEDMTSYRWELQHRPQVGYIRIRFFRQSQLIADTGS
VLDNTVKGGRLGVFCFSQENVIWSNLVYRCNGEYVIKRIVVV
Nucleotide sequence
Length: 2,834
>Cisavi.CG.ENS81.R1.5792681-5806008.20206.t
CCAGTTTGATGATAACTCTGTTTGCGGTTTATGGACTTGCCCAGAATGGAAATAGTCAGC
GCATGTCGAAAGAGATCGATCTACTTAAAGTGTCAAAAACCCGGATTTCAAAAAGAAAAA
TAAACTCTGATAATATAAATTCTGCATTAACGCTGTCGAACAGTGTTTCCATTTTGACAA
ATCTAAGAATACCACCAAAAGAGGCAACACTGTTTATAGAAATTCAGGCGGGAAATTTTG
AACCGTTTAAAAAGTATCTTGAAATAAACGTGGAAGGACACAAGGGTAAAGTACTCGTAA
AATATGAATCAGGAAAAGATAATAATGTTGTCACTTTCCGCAATGTTTGGATATCCGACA
ACCAATTCCACACTTTGGTATTCCACTTCGATGTTATAAGCATAAACGCTGCGAAACTCA
CATTATTAGTGGATTGCTTGGAGTATGGAAGTCATGTGATCGAACCATGGTTGTCTGCAA
CTTTGCCCAACAACTTTACAACGAAATCTATCGTCAAGATTGGAAGAAAATACAGAGGAA
ATTTAAACACATTCATACAAAGAGCGTTGCTTATATCCGACTTAGACCTTGCGTTTGTTC
GTCGGAATTACATCGCGGTTTGCTCACAGTCTGACCGCCCTGACCCCTCATTGTTACTTA
ACAATTACCAGCCTATCTCTGAACTTACTGTGCAATTGTCAGATCTGACTTCGATCCTCC
AAAACATGCACCATGTGATGAAGGAGCAGATATTAGAAGCCAGGGAACTCAGGAGAGCAA
TTCAACAATGTTCATTGTGTAAAGCCGAAGCTCCATGCAGTAATATTGAGTTAAAAGCAA
ACTGTTCTGAGGATCCATGTTATCCAGGGGTTGAGTGTGTTGACATTGATGCTGGATTTG
AGTGTGGGACGTGTCCACTGGGTTATCAAGGCAATGGAAGCAACTGTACTGACATCGATG
AGTGTTTGAACAATCCCTGTTCGACTCAATGCATGAATACACCGGGTAGTTACCATTGTG
ACCCATGTCCAACCGGTTATGACGAAACGATACAGGATGTCAATGTAGATGGCTTGATTA
TACCAACACAGATATGTAGCGACTACAACGAATGTGATGTGGACAATGGTGGCTGCGTCA
AATTCTCTATCTGTCATAATTTTCCTGGCAAATCAACATGCGGGGCTTGTATTGATGGCT
ATACCGGGAATCAGACTGTGGGGTGTAAGAAGATAAGGCACTGCAGTGATGGAGCTGTGA
ACCCATGTGACATCAACGCCGACTGCAAAGTGATCAACACAAGAGAGAGGTACTCGTGTA
CTTGTCGAGTCGGCTACGCCGGGAATGGATTCATTTGCGGCAACGACACTGACCAGGACA
GCTTCCCGGACATGCGGATGCCATGTCATAAGAAGCATTGCAGAAAGGATAACTGCCCTC
AAGTCCCAAACAGTGGGCAAGAAGACTCTGACAACGATGGGTTTGGGGATGCATGTGATG
ACGACGCCGATAACGATGGAGTCCCCAACCACGAGGATAACTGTGTGTTGGTGGCCAACG
CAGACCAACAGAATTCCGACACTGATTCGTTCGGAGACGCGTGCGATAACTGCCCCAATG
TTTCGAACCCCAAACAACACGACACGGATGGGAACGGTGAAGGCGACAAGTGCGACAATG
ACATTGACGGAGATGGAATATCGAACAACGTCGATAACTGCCCCTACACTCCCAACTACA
ATCAGGAAGATCGGGATTTGGACAAAATCGGCGACGCTTGCGACAATTGTTTGAGTATGA
GCAACTCATTGCAGACGGACACAGACAACGATCTCTTGGGAGACATGTGCGATGATGACG
CTGATGCCGATGGTGACGGGTACCAGAATAGCATCGATAACTGCCCCTACGTCATCAACA
ATGCTCAACTAGATACGGACAACGACGGAATAGGAGACGCATGCGACGAGGATGACGACA
ACGATGGAATTCCCGACTACGGCATCAACACAGGCTCGGATAATTGCCGATTGGTATACA
ATCCGAATCAACTCGACCGTGACGAAGATGGAGTCGGTGATGCGTGCGAAGATGACAAAG
ACGGGGACCAGGTGAACGATTGGCGCGACGCGTGCCCGGAAAATGCCGAGGTGACCACCA
CGGACTTCAGGACCTTCCAAAGTGTGACGTTGGACCCTAAGGGTGACGCCCAGGTGGATC
CCCATTGGGTGATCCTTAACAAGGGAATGGAGATCGTGCAAACACAAAACAGTGATCCGG
GATTAGCCATCGGTTACGATTCATTTGACGGGGTCGATTTCAGTGGAACGTTCTTTGTGA
ACACCGCCACTGATGATGATTACGCTGGATTCATCTTCAGTTACCAGAGCAGCTCTCGAT
TTTACGTGGTCACGTGGAAGCAGACGGAGCAAACTTACTGGAGCGCAACTCCCTTCCGCG
CTGTGGCGCAACCGGGATTGCAGTTAAAGGCTGTCAACTCAAACAAAGGTCCTGGAGAAC
GGATGCGGAACGCTCTATGGCATTCCTCCGACACTATGGGTGAGGTCAAAGTCCTGTGGA
GTGACCCCATAAACCAGGGTTGGGAGGATATGACGTCATACAGATGGGAACTGCAGCATA
GACCCCAAGTTGGATACATTAGAATCCGATTTTTTCGGCAGTCGCAATTGATAGCTGACA
CCGGATCAGTGTTGGACAATACAGTCAAAGGTGGTCGACTTGGTGTATTTTGCTTCAGTC
AAGAAAATGTCATTTGGTCGAATTTGGTGTACCGTTGCAACGGTGAGTACGTCATAAAAC
GCATTGTCGTCGTT
| SMART |
Laminin_G (IPR001791) - T[16-192] 4.3E-4 |
| PANTHER |
Thrombospondin (IPR037349) - T[32-933] 0.0 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[49-191] 7.32E-10 - T[718-932] 1.23E-97 |
| Pfam |
Thbs/COMP_coiled-coil (IPR024665) - T[224-265] 1.1E-10 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[275-314] 7.692 - T[408-449] 9.76 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[276-314] 0.014 - T[315-364] 6.7E-7 - T[365-407] 0.058 - T[408-451] 1.6 |
| SMART |
EGF-like_dom (IPR000742) - T[278-314] 0.02 - T[318-364] 0.66 - T[368-407] 33.0 - T[411-451] 0.041 |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[315-345] 2.6E-6 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[315-337] . |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[443-531] 2.3E-22 - T[532-592] 1.4E-20 - T[593-718] 7.8E-41 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[452-533] 2.35E-10 - T[520-592] 4.58E-14 - T[590-716] 6.15E-29 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[452-484] 10.438 - T[485-520] 18.167 - T[521-543] 11.131 - T[544-579] 16.263 - T[580-602] 10.401 - T[603-640] 14.153 - T[641-681] 13.825 - T[682-717] 14.816 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[485-520] 7.0E-11 - T[524-543] 0.026 - T[545-579] 1.9E-13 - T[603-640] 1.2E-8 - T[642-681] 1.4E-7 - T[683-716] 1.4E-9 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[721-935] 99.688 |
| Pfam |
Thrombospondin_C (IPR008859) - T[735-931] 1.1E-94 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 48.677 % | 810 | 0 |
| TSP3_HUMAN | 51.404 % | 850 | 0 |
| COMP_HUMAN | 54.888 % | 737 | 0 |