- Transcript 'Cisavi.CG.ENS81.R1.5...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R1.5792681-5806008.20205.t
Possible name(s)
COMP; THBS3; THBS4
Gene model
Location
R1 [5,792,680 / 5,802,371]
Amino acid sequence
Length: 691
>Cisavi.CG.ENS81.R1.5792681-5806008.20205.p
ILQNMHHVMKEQILEARELRRAIQQCSLCSNNIELKANCSEDPCYPGVECVDIDAGFECG
TCPLGYQGNGSNCTDIDECLNNPCSTQCMNTPGSYHCDPCPTGYDETIQDVNVDGLIIPT
QICSDYNECDVDNGGCVKFSICHNFPGKSTCGACIDGYTGNQTVGCKKIRHCSDGAVNPC
DINADCKVINTRERYSCTCRVGYAGNGFICGNDTDQDSFPDMRMPCHKKHCRKDNCPQVP
NSGQEDSDNDGFGDACDDDADNDGVPNHEDNCVLVANADQQNSDTDSFGDACDNCPNVSN
PKQHDTDGNGEGDKCDNDIDGDGISNNVDNCPYTPNYNQEDRDLDKIGDACDNCLSMSNS
LQTDTDNDLLGDMCDDDADADGDGYQNSIDNCPYVINNAQLDTDNDGIGDACDEDDDNDG
IPDYGINTGSDNCRLVYNPNQLDRDEDGVGDACEDDKDGDQVNDWRDACPENAEVTTTDF
RTFQSVTLDPKGDAQVDPHWVILNKGMEIVQTQNSDPGLAIGYDSFDGVDFSGTFFVNTA
TDDDYAGFIFSYQSSSRFYVVTWKQTEQTYWSATPFRAVAQPGLQLKAVNSNKGPGERMR
NALWHSSDTMGEVKVLWSDPINQGWEDMTSYRWELQHRPQVGYIRIRFFRQSQLIADTGS
VLDNTVKGGRLGVFCFSQENVIWSNLVYRCN
Nucleotide sequence
Length: 2,252
>Cisavi.CG.ENS81.R1.5792681-5806008.20205.t
ATCCTCCAAAACATGCACCATGTGATGAAGGAGCAGATATTAGAAGCCAGGGAACTCAGG
AGAGCAATTCAACAATGTTCATTGTGTAGTAATAATATTGAGTTAAAAGCAAACTGTTCT
GAGGATCCATGTTATCCAGGGGTTGAGTGTGTTGACATTGATGCTGGATTTGAGTGTGGG
ACGTGTCCACTGGGTTATCAAGGCAATGGAAGCAACTGTACTGACATCGATGAGTGTTTG
AACAATCCCTGTTCGACTCAATGCATGAATACACCGGGTAGTTACCATTGTGACCCATGT
CCAACCGGTTATGACGAAACGATACAGGATGTCAATGTAGATGGCTTGATTATACCAACA
CAGATATGTAGCGACTACAACGAATGTGATGTGGACAATGGTGGCTGCGTCAAATTCTCT
ATCTGTCATAATTTTCCTGGCAAATCAACATGCGGGGCTTGTATTGATGGCTATACCGGG
AATCAGACTGTGGGGTGTAAGAAGATAAGGCACTGCAGTGATGGAGCTGTGAACCCATGT
GACATCAACGCCGACTGCAAAGTGATCAACACAAGAGAGAGGTACTCGTGTACTTGTCGA
GTCGGCTACGCCGGGAATGGATTCATTTGCGGCAACGACACTGACCAGGACAGCTTCCCG
GACATGCGGATGCCATGTCATAAGAAGCATTGCAGAAAGGATAACTGCCCTCAAGTCCCA
AACAGTGGGCAAGAAGACTCTGACAACGATGGGTTTGGGGATGCATGTGATGACGACGCC
GATAACGATGGAGTCCCCAACCACGAGGATAACTGTGTGTTGGTGGCCAACGCAGACCAA
CAGAATTCCGACACTGATTCGTTCGGAGACGCGTGCGATAACTGCCCCAATGTTTCGAAC
CCCAAACAACACGACACGGATGGGAACGGTGAAGGCGACAAGTGCGACAATGACATTGAC
GGAGATGGAATATCGAACAACGTCGATAACTGCCCCTACACTCCCAACTACAATCAGGAA
GATCGGGATTTGGACAAAATCGGCGACGCTTGCGACAATTGTTTGAGTATGAGCAACTCA
TTGCAGACGGACACAGACAACGATCTCTTGGGAGACATGTGCGATGATGACGCTGATGCC
GATGGTGACGGGTACCAGAATAGCATCGATAACTGCCCCTACGTCATCAACAATGCTCAA
CTAGATACGGACAACGACGGAATAGGAGACGCATGCGACGAGGATGACGACAACGATGGA
ATTCCCGACTACGGCATCAACACAGGCTCGGATAATTGCCGATTGGTATACAATCCGAAT
CAACTCGACCGTGACGAAGATGGAGTCGGTGATGCGTGCGAAGATGACAAAGACGGGGAC
CAGGTGAACGATTGGCGCGACGCGTGCCCGGAAAATGCCGAGGTGACCACCACGGACTTC
AGGACCTTCCAAAGTGTGACGTTGGACCCTAAGGGTGACGCCCAGGTGGATCCCCATTGG
GTGATCCTTAACAAGGGAATGGAGATCGTGCAAACACAAAACAGTGATCCGGGATTAGCC
ATCGGTTACGATTCATTTGACGGGGTCGATTTCAGTGGAACGTTCTTTGTGAACACCGCC
ACTGATGATGATTACGCTGGATTCATCTTCAGTTACCAGAGCAGCTCTCGATTTTACGTG
GTCACGTGGAAGCAGACGGAGCAAACTTACTGGAGCGCAACTCCCTTCCGCGCTGTGGCG
CAACCGGGATTGCAGTTAAAGGCTGTCAACTCAAACAAAGGTCCTGGAGAACGGATGCGG
AACGCTCTATGGCATTCCTCCGACACTATGGGTGAGGTCAAAGTCCTGTGGAGTGACCCC
ATAAACCAGGGTTGGGAGGATATGACGTCATACAGATGGGAACTGCAGCATAGACCCCAA
GTTGGATACATTAGAATCCGATTTTTTCGGCAGTCGCAATTGATAGCTGACACCGGATCA
GTGTTGGACAATACAGTCAAAGGTGGTCGACTTGGTGTATTTTGCTTCAGTCAAGAAAAT
GTCATTTGGTCGAATTTGGTGTACCGTTGCAACGACACACTACCAGCCGGTGCGCAAGAT
ACCTCGTATACGGGCGAACAATTGTGATTTCATTGTTTTTGTGCAGATAATTTAAATTAG
GCAAAGCCGGCCATTTTTTACAGTTGTTGTTTGATTATCATCAAACTTTACGTTGAACCA
ACTTTGTAGTATTAAGTGACGTTCAATTTGTG
| PANTHER |
Thrombospondin (IPR037349) - T[20-691] 0.0 |
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[35-74] 7.692 - T[168-209] 9.76 |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[36-74] 0.014 - T[75-124] 6.7E-7 - T[125-167] 0.058 - T[168-211] 1.6 |
| SMART |
EGF-like_dom (IPR000742) - T[38-74] 0.02 - T[78-124] 0.66 - T[128-167] 33.0 - T[171-211] 0.041 |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[75-97] . |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[75-105] 1.8E-6 |
| Gene3D |
TSP_type-3_rpt (IPR028974) - T[206-292] 1.6E-22 - T[293-352] 1.6E-20 - T[353-478] 5.5E-41 |
| SUPERFAMILY |
TSP_type-3_rpt (IPR028974) - T[212-293] 1.28E-10 - T[280-352] 1.83E-14 - T[350-476] 3.27E-29 |
| ProSiteProfiles |
Thrombospondin_3_rpt (IPR017897) - T[212-244] 10.438 - T[245-280] 18.167 - T[281-303] 11.131 - T[304-339] 16.263 - T[340-362] 10.401 - T[363-400] 14.153 - T[401-441] 13.825 - T[442-477] 14.816 |
| Pfam |
Thrombospondin_3-like_rpt (IPR003367) - T[245-280] 4.9E-11 - T[284-303] 0.019 - T[305-339] 1.3E-13 - T[363-400] 8.2E-9 - T[402-441] 9.3E-8 - T[443-476] 1.0E-9 |
| SUPERFAMILY |
ConA-like_dom_sf (IPR013320) - T[478-691] 7.44E-97 |
| ProSiteProfiles |
Thrombospondin_C (IPR008859) - T[481-691] 100.183 |
| Pfam |
Thrombospondin_C (IPR008859) - T[495-691] 1.2E-94 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSP4_HUMAN | 57.703 % | 764 | 0 |
| TSP3_HUMAN | 60 % | 782 | 0 |
| COMP_HUMAN | 56.392 % | 728 | 0 |