- Transcript 'Cisavi.CG.ENS81.R19....' >
- Transcript 'KH2012:KH.C8.551.v2....' >
- Region 'REG00000855' >
- Transcript 'Cisavi.CG.ENS81.R156...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R156.157534-169654.14315.t
Possible name(s)
TBX3; TBX4; TBX6
Gene model
Location
R156 [160,909 / 165,816]
Amino acid sequence
Length: 202
>Cisavi.CG.ENS81.R156.157534-169654.14315.p
MFPGYRVKIIGMDPNAQYCVLIDISSVDESRYKFQHGKWVIAGRGEPHIPQRFYVHPNSP
CTGQKWMENIVSFHKVKLTNSCGNCGEGKFFVHSMHRYQPRLHIVRTDDVNTLHLQPMST
FAFPQTSFTTVTAYQNGEIAKLKIANNPYARGFREDGAKTMNAKSTLASFTRPVSTTHKR
RCTPNTTSPNSTKRVKLDYTPA
Nucleotide sequence
Length: 771
>Cisavi.CG.ENS81.R156.157534-169654.14315.t
ACGAAGATTCTAGAACATTAAAAGATGATAATGAAAATTGCAAATTCAAACCATCAAGCG
ATGAGCTCACGATCCGGACCGCAAGTTCATCTTCACGATGTGCAGTTATGGGACAACTTC
TCAGCTGCTCAGACTGAAATGATTGTTACTAAAACCGGAAGCGAATGTTCCCTGGTTACC
GAGTTAAAATAATTGGGATGGACCCGAACGCTCAGTATTGCGTATTGATAGACATTTCGA
GTGTGGATGAAAGCAGATACAAGTTTCAACACGGGAAGTGGGTGATAGCTGGTCGTGGAG
AACCACACATCCCACAAAGATTTTATGTGCACCCGAACTCACCTTGTACCGGACAAAAAT
GGATGGAAAATATCGTTTCTTTCCACAAAGTTAAATTAACCAATTCATGTGGGAATTGTG
GAGAAGGAAAGTTCTTCGTACATTCCATGCATCGATATCAACCTCGTCTCCACATTGTTC
GAACTGATGACGTCAATACGTTACATCTTCAACCGATGTCAACTTTCGCTTTCCCACAAA
CTTCCTTTACAACGGTCACAGCATACCAGAACGGAGAGATCGCTAAGTTAAAGATAGCCA
ACAACCCTTACGCCCGAGGCTTCAGAGAAGACGGAGCGAAGACTATGAACGCGAAATCGA
CACTTGCGTCATTTACTCGACCTGTATCAACCACCCACAAGCGAAGATGCACTCCAAACA
CCACTTCTCCGAATTCCACAAAACGAGTGAAACTTGATTACACACCAGCAG
| Pfam |
TF_T-box (IPR001699) - T[1-155] 4.4E-58 |
| SMART |
TF_T-box (IPR001699) - T[1-160] 3.2E-64 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[1-155] 58.313 |
| PANTHER |
TF_T-box (IPR001699) - T[1-172] 1.5E-97 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[1-155] 1.06E-57 |
| Gene3D |
T-box_sf (IPR036960) - T[1-160] 7.9E-65 |
| PRINTS |
TF_Brachyury (IPR002070) - T[34-54] 1.6E-5 - T[96-113] 1.6E-5 |
| PRINTS |
TF_T-box (IPR001699) - T[54-67] 1.6E-25 - T[71-80] 1.6E-25 - T[91-105] 1.6E-25 - T[126-139] 1.6E-25 - T[147-155] 1.6E-25 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[55-73] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX6_HUMAN | 50.955 % | 182 | 6.98E-56 |
| TBX2_HUMAN | 42.932 % | 177 | 5.74E-52 |
| TBX4_HUMAN | 51.923 % | 174 | 8.78E-52 |