- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04420.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,828 / 1,585,491]
Amino acid sequence
Length: 1,366
>Cisavi.CG.ENS81.R143.1552530-1586469.04420.p
GLDGPPGFQGPPGGPGEYGDRGPPGRDGLPGEKGLPGPPGRHIMIPFRIAQPNGEKGPGS
NAPAEMQAQLALTQARGQRGPRGSMGPDGMPGKPGRVGEDGLRGEPGAMGSKGDRGYDGL
PGLPGPKGHRGEQGEAGPRGLPGEAGPRGEMGHKGPPGVSGPPGPRGVHGQQGPKGNLGP
QGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLPGIPGADGAPGHPGNEGPTGS
KGSQGQPGPQGPQGYPGTRGVKGENGVRGIKGNKGEKGLDGLPGFKGDMGPKGDTGIAGP
TGSRGEDGPEGPKGREGARGELGPVGLTGEKGSLGKPGKPGQMGLKGDRVSREIIFVVLR
GRGGLLDGPDLGGPRGKRGPRGSTGKAGPKVNRKMGIFPGPPGPRGPSGYVGTKGPPGPP
GKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTGENGPSGNRGHPGPPGPAGEPGLS
GSAGKEGSKGDRGPRGPIGKMGATGSQGFPGSRGPQGPVGAPGLKGSEGPPGPPGPLQYI
ISLFFYFKQKLIFLYFCAEFKNIFDQNRFFFILVFSCNINFFFLNRGDQALMGHRGRRVR
TGARVGQEVRAQQAEMVCRGLWGFQAHRDPSGHAAKMVTRAKLGLLVQPASKVERASTGH
LGRPAYKETAAILAHRVTTESQVKGVSKVYTAKRVMRDPGDFPVHQDPAVCRGFPGRQEA
KEIPVTLGPWYHSIDTAPKPLFTHMSLGHIKVRQNMYTIIVGGSMIICSPITPFHPHRDQ
KEKTAKRVKQVSRGHRAKLGLEGHAATTDPKEILLSSSLITTIQSCQVIQCGPVGFPGDP
GVSGIPGTPGDEGVPGDVGDTGAPGEPGPPGPSGEVGPSGGPGRRGPAGPAGAEGRPGEK
GAKGESGGIGPVGEPGPHGLQGKTGKRGTTGLQGLPGPAGAPGLPGSSGADGPVGPMVSY
ILFLSYSKLCYTPFLFYDSFNVVIFIFMGPSGLKGIKGEMGVSGEKGHPGLIGLVGPPGE
EGEKGERGPQGRDGPHGAKGDDGRPGPSGPVGPMGAPGLPGSLGSKGNKGSLGPTGPKGD
EGIQGPPGPPGPPGQVYNASPLTANSMKARRRRSTEEEGLHREKRQAQDESFIEYPEGLE
EIYAAMETLKQELEMMKEPMGRTQDNPGRSCKDIWLCHPDFPSGNYWIDPNGGCSADAIE
VFCDFEAEGDTCISPVERTASVSWLTSKRWPKAQPGDWFSSYRMGDRFEYNTSIPQFNFL
RLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAIHLLAANDEVLTYGSEHLTVIEDNCKTG
HGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQRHGYQLDRVCFSG
Nucleotide sequence
Length: 4,101
>Cisavi.CG.ENS81.R143.1552530-1586469.04420.t
GGTCTCGACGGGCCACCGGGCTTCCAAGGGCCACCGGGAGGACCTGGCGAATATGGCGAC
CGGGGACCTCCTGGCAGAGATGGGCTTCCCGGCGAAAAAGGGCTTCCTGGGCCACCTGGT
CGACACATTATGATACCGTTCCGAATCGCTCAACCCAATGGAGAAAAAGGACCCGGGTCA
AATGCACCAGCTGAAATGCAAGCACAGCTTGCTTTAACCCAAGCTAGGGGCCAAAGGGGA
CCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCTGGAAGAGTGGGGGAAGAC
GGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGACAGAGGTTATGATGGGTTG
CCAGGGTTACCAGGCCCCAAGGGTCATCGGGGTGAACAAGGAGAGGCAGGACCACGTGGT
TTACCTGGTGAAGCGGGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGCGTATCC
GGCCCACCTGGCCCGAGAGGAGTCCATGGGCAACAAGGACCTAAAGGAAATCTGGGCCCA
CAAGGCGAACCGGGCCCCCCAGGCCAACAAGGCACATCCGGGCCACAGGGTATTCCCGGC
CCACAAGGTATGATGGGACCACCTGGCACCAAAGGGCCTCACGGCAAAGCCGGCTTACCT
GGCATACCGGGCGCAGACGGCGCACCCGGGCACCCGGGTAACGAAGGTCCCACTGGCAGC
AAAGGTTCCCAGGGTCAACCTGGGCCACAAGGACCACAAGGCTACCCTGGAACACGAGGT
GTTAAAGGAGAAAATGGAGTCAGAGGTATCAAGGGAAACAAAGGAGAGAAAGGTCTTGAT
GGGTTACCAGGATTCAAAGGGGATATGGGTCCTAAGGGTGACACGGGAATTGCGGGGCCA
ACAGGCTCAAGAGGAGAAGACGGCCCAGAAGGACCCAAGGGAAGAGAAGGGGCACGTGGA
GAACTGGGTCCAGTCGGTCTCACTGGCGAAAAGGGGTCGCTTGGAAAGCCTGGTAAACCG
GGGCAGATGGGGCTGAAAGGGGACCGGGTGAGTAGAGAAATAATATTTGTTGTTTTAAGG
GGTCGAGGGGGCTTATTGGACGGCCCGGACTTAGGGGGACCCAGAGGCAAACGGGGTCCT
AGAGGATCAACTGGCAAAGCAGGACCCAAGGTAAATAGAAAAATGGGGATTTTCCCTGGG
CCGCCTGGACCCAGAGGACCAAGTGGGTACGTTGGCACCAAAGGGCCACCGGGTCCACCA
GGGAAAGACGGGCTTCCAGGACATCCAGGAAGTCGTGGAGAAACTGGATTCCAAGGCAAG
ACGGGGCCACCTGGACCAGCCGGCGTCGTCGGCCCACAGGGACCAACCGGCGAAAACGGG
CCTTCCGGTAACAGAGGACACCCAGGGCCGCCTGGACCAGCTGGCGAACCTGGCCTTTCC
GGCTCCGCGGGCAAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGACCCATAGGAAAA
ATGGGGGCAACTGGATCGCAGGGTTTCCCTGGGTCTAGGGGTCCACAGGGACCAGTGGGT
GCTCCAGGCTTAAAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCATTGCAATATATA
ATTTCACTTTTTTTTTATTTCAAACAAAAATTGATTTTTTTATATTTTTGTGCAGAGTTT
AAAAATATTTTTGACCAAAATCGATTTTTTTTCATTTTAGTATTTTCCTGTAATATTAAT
TTTTTTTTCTTAAACAGGGGCGACCAGGCGCTAATGGGCCACCGGGGCCGCAGGGTGAGA
ACGGGAGCCCGGGTGGGCCAGGAGGTCCGGGCCCAGCAGGCCGAGATGGTCTGCAGGGGC
CTGTGGGGCTTCCAGGCGCACCGGGATCCATCGGGCCACGCGGCGAAGATGGTGACAAGG
GCGAAGCTGGGCCTCCTGGTGCAACCGGCCTCAAAGGTGGAAAGGGCGAGCACGGGCCAC
CTGGGCCGCCCGGCGTACAAGGAAACAGCGGCGATCCTGGCCCACCGGGTAACGACGGAG
AGCCAGGTCAAAGGGGTCAGCAAGGTTTATACGGCGAAAAGGGTGATGAGGGACCCAGGG
GATTTCCCGGTCCACCAGGACCCCGCGGTTTGCAGGGGATTCCCGGGCCGTCAGGAAGCA
AAGGAGATACCGGTGACGCTGGGCCCTTGGTATCACTCAATAGATACAGCCCCAAAACCC
CTTTTCACCCACATGAGCTTGGGGCACATTAAAGTTCGCCAAAATATGTATACAATAATA
GTGGGAGGGTCCATGATAATATGCAGCCCCATAACCCCTTTTCACCCACACAGGGACCAA
AAGGAGAAAACGGCGAAAAGGGTGAAGCAGGTCTCACGGGGCCACAGGGCGAAGCTGGGC
CTCGAGGGCCACGCGGCGACGACGGACCCAAAGGAAATCCTACTTTCTAGCTCTCTTATT
ACCACCATTCAGTCATGTCAAGTCATACAATGCGGTCCAGTTGGTTTCCCTGGCGACCCC
GGCGTATCTGGTATTCCTGGAACCCCCGGAGACGAAGGAGTTCCCGGAGATGTTGGAGAC
ACTGGAGCACCTGGCGAACCTGGGCCACCCGGACCAAGTGGCGAAGTGGGGCCATCCGGC
GGACCAGGAAGACGCGGTCCTGCTGGTCCCGCTGGTGCAGAAGGTCGACCTGGTGAAAAG
GGGGCCAAGGGCGAAAGCGGCGGAATCGGCCCCGTCGGCGAACCCGGGCCTCATGGGCTT
CAAGGAAAAACTGGAAAGAGAGGAACAACTGGACTTCAAGGTCTTCCTGGCCCAGCTGGC
GCTCCTGGTCTACCTGGCAGTTCTGGCGCAGACGGACCGGTTGGCCCCATGGTAAGTTAT
ATATTATTTCTAAGCTATTCCAAATTATGTTATACACCTTTTCTCTTCTATGACAGTTTT
AATGTAGTTATATTTATTTTTATGGGACCATCTGGTTTGAAAGGAATCAAGGGAGAAATG
GGCGTTTCTGGTGAAAAGGGTCACCCCGGTCTCATCGGGCTGGTCGGCCCCCCTGGGGAA
GAGGGTGAGAAGGGTGAACGCGGTCCACAGGGCCGCGATGGTCCACATGGAGCCAAGGGT
GACGACGGCAGACCCGGGCCATCCGGACCCGTTGGGCCAATGGGCGCACCCGGCTTACCG
GGAAGCCTTGGTTCAAAGGGAAACAAAGGAAGTCTGGGACCCACGGGACCTAAAGGAGAC
GAAGGTATCCAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTGTACAACGCGTCC
CCACTAACTGCGAATTCCATGAAGGCTCGAAGAAGAAGATCTACAGAAGAAGAGGGACTT
CACCGTGAGAAGCGTCAAGCTCAAGACGAGAGTTTCATCGAGTACCCCGAAGGCCTTGAG
GAAATCTACGCGGCGATGGAAACGCTCAAACAGGAACTTGAAATGATGAAGGAACCCATG
GGGAGGACCCAGGATAACCCTGGGAGGAGCTGCAAGGATATCTGGCTCTGTCACCCCGAT
TTCCCGTCAGGCAACTACTGGATTGATCCGAACGGAGGGTGTTCTGCGGATGCCATCGAA
GTTTTCTGCGATTTCGAGGCGGAAGGCGACACTTGCATCTCACCAGTTGAGCGAACCGCA
AGTGTAAGTTGGTTGACCTCCAAGCGATGGCCGAAAGCACAACCTGGTGATTGGTTTAGC
TCCTACAGGATGGGCGACAGGTTTGAATACAACACTAGCATCCCGCAATTCAACTTCCTG
CGGTTGCTATCGTCGCAAGCGAAGCAAAGATTCACCTACAAGTGCGTCAACTCTATCGGC
TGGGAGAACCAACAAACCGGTAGCTTCGACCAAGCCATCCACTTGCTTGCTGCTAACGAT
GAGGTTCTGACTTACGGTAGCGAACATCTTACGGTGATTGAGGATAACTGCAAGACCGGC
CACGGAAATGGACAGGTGGTTCTAGAACTCCGTACGCGTGAGGTCGACCTCCTACCATTG
TTCGATTACAAAGCTTTCGACTTTGGTACCCGCTCCCAACGACACGGATACCAACTCGAT
CGCGTTTGTTTTAGCGGATGA
| Pfam |
Collagen (IPR008160) - T[77-135] 1.6E-9 - T[202-258] 1.4E-6 - T[236-294] 1.5E-8 - T[287-344] 3.7E-8 - T[427-482] 3.7E-7 - T[483-535] 2.6E-8 - T[832-889] 4.9E-7 - T[898-956] 1.2E-7 - T[989-1047] 1.4E-9 - T[1037-1095] 1.7E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1139-1365] 2.0E-76 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1140-1365] 73.863 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1140-1364] 7.2E-69 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1259-1364] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 56.114 % | 334 | 5.12E-94 |
| COBA1_HUMAN | 46.488 % | 320 | 1.73E-89 |
| CO5A1_HUMAN | 45.522 % | 288 | 4.66E-79 |