- Transcript 'Harore.CG.MTP2014.S4...' >
- EST 'AHC0AAA233YA03_RM1' >
- Transcript 'KH2012:KH.C2.643.v1....' >
- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04418.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,699 / 1,586,009]
Amino acid sequence
Length: 1,316
>Cisavi.CG.ENS81.R143.1552530-1586469.04418.p
IPGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPGEKGLPGPPGRHIMIPFRI
AQPNGEKGPGSNAPAEMQAQLALTQARVRPPGPQGLAGMPGTAGDMGPAGIKGESGEPGP
MGQRGPRGSMGPDGMPGKPGRVGEDGLRGEPGAMGSKGDRGYDGLPGLPGPKGHRVSHVG
PIGPPGGDGEQGEQGEAGPRGLPGEAGPRGEMGHKGPPGVSGPPGPRGVHGQQGPKGNLV
NPFLSFQGPQGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLPGIPGADGAPGH
PGNEGPTGSKGSQGQPGPQGPQGYPGTRGGENGVRGIKGNKGEKGLDGLPGFKGDMGPKG
DTGIAGPTGSRGEDGPEGPKGREGARGELGPVGLTGEKGKIGVPGLPGYPGRSGIKGSLG
KPGKPGQMGLKGDRGSRGLIGRPGLRGLKGKRGLEGKRGQEGQRGKRGPRGSTGKAGPKG
PPGPRGPSGYVGTKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTGENG
PSGNRGHPGPPVSILLHSSQENPPKNPEIIKVSPQGPAGEPGLSGSAGKEGSKGDRGPRG
PIGKMGATGSQGFPGSRGPQGPVGAPGLKGSEGPPGPPGPLGRPGANGPPGPQGENGSPG
GPGGPGPAGRDGLQGPVGLPGAPGSIGPRGEDGDKGEAGPPGATGLKGGKGEHGPPGPPG
VQGNSGDPGPPGNDGEPGQRGQQGLYGEKGDEGPRGFPGPPGPRGLQGIPGPSGSKGDTG
DAGPLGPPGPAGQRGPPGGPEGPPGTYGQPGNVGDKGPKGENGEKGEAGLTGPQGEAGPR
GPRGDDGPKGNPGPVGFPGDPGVSGIPGTPGDEGVPGDVGDTGAPGEPGPPGPSGEVGPS
GGPGRRGPAGPAGAEGRPGEKGAKGESGGIGPVGEPGPHGLQGKTGKRGTTGLQGLPGPA
GAPGLPGSSGADGPVGPMGPSGLKGIKGEMGVSGEKGHPGLIGLVGPPGEEGEKGERGPQ
GRDGPHGAKGDDGRPGPSGPVGPMGAPGLPGPTGPKGDEGIQGPPGPPGPPGQVYNASPL
TANSMKARRRRYPEGLEEIYAAMETLKQELEMMKEPMGRTQDNPGRSCKDIWLCHPDFPS
GNYWIDPNGGCSADAIEVFCDFEAEGDTCISPVERTASVSWLTSQPGDWFSSYRMGDRFE
YNTSIPQFNFLRLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAIHLLAANDEVLTYGSEH
LTVIEDNCKTGHGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQRHGYQLDRVCFS
Nucleotide sequence
Length: 4,083
>Cisavi.CG.ENS81.R143.1552530-1586469.04418.t
ATTCCTGGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAA
GGGCCACCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGAGATGGGCTT
CCCGGCGAAAAAGGGCTTCCTGGGCCACCTGGTCGACACATTATGATACCGTTCCGAATC
GCTCAACCCAATGGAGAAAAAGGACCCGGGTCAAATGCACCAGCTGAAATGCAAGCACAG
CTTGCTTTAACCCAAGCTAGGGTAAGGCCACCCGGGCCGCAGGGTCTTGCTGGAATGCCC
GGCACAGCAGGTGATATGGGGCCAGCTGGGATAAAGGGTGAATCAGGGGAACCAGGTCCA
ATGGGCCAAAGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCTGGA
AGAGTGGGGGAAGACGGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGACAGA
GGTTATGATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCATCGGGTGAGTCACGTTGGT
CCAATCGGACCACCAGGTGGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCACGT
GGTTTACCTGGTGAAGCGGGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGCGTA
TCCGGCCCACCTGGCCCGAGAGGAGTCCATGGGCAACAAGGACCTAAAGGAAATCTGGTG
AACCCATTTCTTTCATTTCAGGGCCCACAAGGCGAACCGGGCCCCCCAGGCCAACAAGGC
ACATCCGGGCCACAGGGTATTCCCGGCCCACAAGGTATGATGGGACCACCTGGCACCAAA
GGGCCTCACGGCAAAGCCGGCTTACCTGGCATACCGGGCGCAGACGGCGCACCCGGGCAC
CCGGGTAACGAAGGTCCCACTGGCAGCAAAGGTTCCCAGGGTCAACCTGGGCCACAAGGA
CCACAAGGCTACCCTGGAACACGAGGTGGAGAAAATGGAGTCAGAGGTATCAAGGGAAAC
AAAGGAGAGAAAGGTCTTGATGGGTTACCAGGATTCAAAGGGGATATGGGTCCTAAGGGT
GACACGGGAATTGCGGGGCCAACAGGCTCAAGAGGAGAAGACGGCCCAGAAGGACCCAAG
GGAAGAGAAGGGGCACGTGGAGAACTGGGTCCAGTCGGTCTCACTGGCGAAAAGGGTAAA
ATCGGAGTTCCCGGTCTTCCTGGCTATCCTGGTCGATCTGGAATCAAGGGGTCGCTTGGA
AAGCCTGGTAAACCGGGGCAGATGGGGCTGAAAGGGGACCGGGGGTCGAGGGGGCTTATT
GGACGGCCCGGACTTAGGGGTCTAAAGGGAAAGAGGGGTTTAGAAGGCAAACGAGGCCAA
GAAGGTCAAAGAGGCAAACGGGGTCCTAGAGGATCAACTGGCAAAGCAGGACCCAAGGGG
CCGCCTGGACCCAGAGGACCAAGTGGGTACGTTGGCACCAAAGGGCCACCGGGTCCACCA
GGGAAAGACGGGCTTCCAGGACATCCAGGAAGTCGTGGAGAAACTGGATTCCAAGGCAAG
ACGGGGCCACCTGGACCAGCCGGCGTCGTCGGCCCACAGGGACCAACCGGCGAAAACGGG
CCTTCCGGTAACAGAGGACACCCAGGGCCGCCTGTAAGTATTTTGCTGCACTCCTCCCAA
GAAAACCCTCCCAAAAACCCCGAAATAATTAAAGTTTCACCACAGGGACCAGCTGGCGAA
CCTGGCCTTTCCGGCTCCGCGGGCAAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGA
CCCATAGGAAAAATGGGGGCAACTGGATCGCAGGGTTTCCCTGGGTCTAGGGGTCCACAG
GGACCAGTGGGTGCTCCAGGCTTAAAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCA
TTGGGGCGACCAGGCGCTAATGGGCCACCGGGGCCGCAGGGTGAGAACGGGAGCCCGGGT
GGGCCAGGAGGTCCGGGCCCAGCAGGCCGAGATGGTCTGCAGGGGCCTGTGGGGCTTCCA
GGCGCACCGGGATCCATCGGGCCACGCGGCGAAGATGGTGACAAGGGCGAAGCTGGGCCT
CCTGGTGCAACCGGCCTCAAAGGTGGAAAGGGCGAGCACGGGCCACCTGGGCCGCCCGGC
GTACAAGGAAACAGCGGCGATCCTGGCCCACCGGGTAACGACGGAGAGCCAGGTCAAAGG
GGTCAGCAAGGTTTATACGGCGAAAAGGGTGATGAGGGACCCAGGGGATTTCCCGGTCCA
CCAGGACCCCGCGGTTTGCAGGGGATTCCCGGGCCGTCAGGAAGCAAAGGAGATACCGGT
GACGCTGGGCCCTTGGGGCCACCTGGACCGGCTGGACAACGAGGCCCCCCTGGTGGACCT
GAGGGGCCACCTGGTACGTATGGTCAACCCGGCAACGTCGGCGACAAGGGACCAAAAGGA
GAAAACGGCGAAAAGGGTGAAGCAGGTCTCACGGGGCCACAGGGCGAAGCTGGGCCTCGA
GGGCCACGCGGCGACGACGGACCCAAAGGAAATCCTGGTCCAGTTGGTTTCCCTGGCGAC
CCCGGCGTATCTGGTATTCCTGGAACCCCCGGAGACGAAGGAGTTCCCGGAGATGTTGGA
GACACTGGAGCACCTGGCGAACCTGGGCCACCCGGACCAAGTGGCGAAGTGGGGCCATCC
GGCGGACCAGGAAGACGCGGTCCTGCTGGTCCCGCTGGTGCAGAAGGTCGACCTGGTGAA
AAGGGGGCCAAGGGCGAAAGCGGCGGAATCGGCCCCGTCGGCGAACCCGGGCCTCATGGG
CTTCAAGGAAAAACTGGAAAGAGAGGAACAACTGGACTTCAAGGTCTTCCTGGCCCAGCT
GGCGCTCCTGGTCTACCTGGCAGTTCTGGCGCAGACGGACCGGTTGGCCCCATGGGACCA
TCTGGTTTGAAAGGAATCAAGGGAGAAATGGGCGTTTCTGGTGAAAAGGGTCACCCCGGT
CTCATCGGGCTGGTCGGCCCCCCTGGGGAAGAGGGTGAGAAGGGTGAACGCGGTCCACAG
GGCCGCGATGGTCCACATGGAGCCAAGGGTGACGACGGCAGACCCGGGCCATCCGGACCC
GTTGGGCCAATGGGCGCACCCGGCTTACCGGGACCCACGGGACCTAAAGGAGACGAAGGT
ATCCAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTGTACAACGCGTCCCCACTA
ACTGCGAATTCCATGAAGGCTCGAAGAAGAAGATACCCCGAAGGCCTTGAGGAAATCTAC
GCGGCGATGGAAACGCTCAAACAGGAACTTGAAATGATGAAGGAACCCATGGGGAGGACC
CAGGATAACCCTGGGAGGAGCTGCAAGGATATCTGGCTCTGTCACCCCGATTTCCCGTCA
GGCAACTACTGGATTGATCCGAACGGAGGGTGTTCTGCGGATGCCATCGAAGTTTTCTGC
GATTTCGAGGCGGAAGGCGACACTTGCATCTCACCAGTTGAGCGAACCGCAAGTGTAAGT
TGGTTGACCTCACAACCTGGTGATTGGTTTAGCTCCTACAGGATGGGCGACAGGTTTGAA
TACAACACTAGCATCCCGCAATTCAACTTCCTGCGGTTGCTATCGTCGCAAGCGAAGCAA
AGATTCACCTACAAGTGCGTCAACTCTATCGGCTGGGAGAACCAACAAACCGGTAGCTTC
GACCAAGCCATCCACTTGCTTGCTGCTAACGATGAGGTTCTGACTTACGGTAGCGAACAT
CTTACGGTGATTGAGGATAACTGCAAGACCGGCCACGGAAATGGACAGGTGGTTCTAGAA
CTCCGTACGCGTGAGGTCGACCTCCTACCATTGTTCGATTACAAAGCTTTCGACTTTGGT
ACCCGCTCCCAACGACACGGATACCAACTCGATCGCGTTTGTTTTAGCGGATGAATATAA
TCATGTCTTCACGAGCCACGTTTTGACGGGTGGCGCGCGCCGCCGCACGGCTTCAGCGCC
CGATCGGCGCGCTTATAAAGGAGAAGGGGTCTTCCCACAAGTGCTGGTGCGGGAGCGCTC
CCT
| Pfam |
Collagen (IPR008160) - T[3-51] 3.7E-8 - T[91-146] 2.7E-8 - T[119-174] 6.1E-9 - T[180-237] 6.5E-8 - T[248-303] 1.6E-8 - T[378-436] 2.0E-6 - T[450-508] 1.6E-7 - T[492-550] 5.2E-9 - T[575-630] 6.0E-8 - T[1015-1073] 1.9E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1096-1316] 3.3E-75 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1097-1316] 73.315 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1097-1315] 1.5E-68 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1210-1315] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 57.678 % | 553 | 5.05E-171 |
| COBA1_HUMAN | 55.022 % | 650 | 0 |
| CO5A3_HUMAN | 50.148 % | 665 | 0 |