- Transcript 'Phfumi.CG.MTP2014.S9...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.C9.220.v1....' >
- Transcript 'Haaura.CG.MTP2014.S3...' >
- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04417.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,599 / 1,586,006]
Amino acid sequence
Length: 1,222
>Cisavi.CG.ENS81.R143.1552530-1586469.04417.p
PGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPGEKGLPGPPGPPGPQGLAGM
PGTAGDMGPAGIKGESGEPGPMGQRGPRGSMGPDGMPGKPGRVGEDGLRGEPGAMGSKGD
RGYDGLPGLPGPKGHVGPIGPPGGDGEQGEQGEAGPRGLPGEAGPRGEMGHKGPPGVSGP
PGPQGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLPGIPGADGAPGHPGNEGP
TGSKGSQGQPGPQGPQGYPGTRGVKGENGVRGIKGNKGEKVSTIGIAGPTGSRGEDGPEG
PKGREGARGELGPVGLTGEKGKIGVPGLPGYPGRSGIKGSLGKPGKPGQMGLKGDRGSRG
LIGRPGLRGLKGKRGLEGKRGQEGQRGPKGPRGKRGPRGSTGKAGPKGPPGPRGPSGYVG
TKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTGENGPSGNRGHPGPPG
PAGEPGLSGSAGKEGSKGDRGPRGPIGKMGATGSQGFPGSRGANGPPGPQGENGSPGGPG
GPGPAGRDGLQGPVGLPGAPGSIGPRGEDGDKGEAGPPGATGLKGGKGEHGPPGPPGVQG
NSGDPGPPGNDGEPGQRGQQGLYGEKGDEGPRGFPGPPGPRGLQGIPGPSGSKGDTGDAG
PLGPEGPPGTYGQPGNVGDKGEPGGPGAPGISGEPGPMMQPHNPFSPTQGPKGENGEKGE
AGLTGPQGEAGPRGPRGDDGPKGNPGPVGFPGDPGVSGIPGTPGDEGVPGDVGDTGAPGE
PGPPGPSGEVGPSGGPGRRGPAGPAGAEGRPGEKGAKVNFYFQGESGGIGPVGEPGPHGL
QGKTGKRGTTGLQGLPGPAGAPGLPGSSGADGPVGPMGPSGLKGIKGEMGVSGEKGHSGH
PGLIGLVGPPGEEGEKGERGPQGRDGPHGAKGDDGRPGPSGPVGPMGAPGLPGPTGPKGD
EGIQGPPGPPGPPGQVYNASPLTANSMKARRRRSFIEYPEGLEEIYAAMETLKQELEMMK
EPMGRTQDNPGRSCKDIWLCHPDFPSGNYWIDPNGGCSADAIEVFCDFEAEGDTCISPVE
RTATKRWPKAQPGDWFSSYRMGDRFEYNTSIPQFNFLRLLSSQAKQRFTYKCVNSIGWEN
QQTGSFDQAIHLLAANDEVLTYGSEHLTVIEDNCKTGHGNGQVVLELRTREVDLLPLFDY
KAFDFGTRSQRHGYQLDRVCFS
Nucleotide sequence
Length: 3,901
>Cisavi.CG.ENS81.R143.1552530-1586469.04417.t
CCTGGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAAGGG
CCACCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGAGATGGGCTTCCC
GGCGAAAAAGGGCTTCCTGGGCCACCTGGGCCACCCGGGCCGCAGGGTCTTGCTGGAATG
CCCGGCACAGCAGGTGATATGGGGCCAGCTGGGATAAAGGGTGAATCAGGGGAACCAGGT
CCAATGGGCCAAAGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCT
GGAAGAGTGGGGGAAGACGGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGAC
AGAGGTTATGATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCACGTTGGTCCAATCGGA
CCACCAGGTGGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCACGTGGTTTACCT
GGTGAAGCGGGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGCGTATCCGGCCCA
CCTGGCCCACAAGGCGAACCGGGCCCCCCAGGCCAACAAGGCACATCCGGGCCACAGGGT
ATTCCCGGCCCACAAGGTATGATGGGACCACCTGGCACCAAAGGGCCTCACGGCAAAGCC
GGCTTACCTGGCATACCGGGCGCAGACGGCGCACCCGGGCACCCGGGTAACGAAGGTCCC
ACTGGCAGCAAAGGTTCCCAGGGTCAACCTGGGCCACAAGGACCACAAGGCTACCCTGGA
ACACGAGGTGTTAAAGGAGAAAATGGAGTCAGAGGTATCAAGGGAAACAAAGGAGAGAAA
GTAAGTACCATTGGAATTGCGGGGCCAACAGGCTCAAGAGGAGAAGACGGCCCAGAAGGA
CCCAAGGGAAGAGAAGGGGCACGTGGAGAACTGGGTCCAGTCGGTCTCACTGGCGAAAAG
GGTAAAATCGGAGTTCCCGGTCTTCCTGGCTATCCTGGTCGATCTGGAATCAAGGGGTCG
CTTGGAAAGCCTGGTAAACCGGGGCAGATGGGGCTGAAAGGGGACCGGGGGTCGAGGGGG
CTTATTGGACGGCCCGGACTTAGGGGTCTAAAGGGAAAGAGGGGTTTAGAAGGCAAACGA
GGCCAAGAAGGTCAAAGAGGTCCGAAGGGACCCAGAGGCAAACGGGGTCCTAGAGGATCA
ACTGGCAAAGCAGGACCCAAGGGGCCGCCTGGACCCAGAGGACCAAGTGGGTACGTTGGC
ACCAAAGGGCCACCGGGTCCACCAGGGAAAGACGGGCTTCCAGGACATCCAGGAAGTCGT
GGAGAAACTGGATTCCAAGGCAAGACGGGGCCACCTGGACCAGCCGGCGTCGTCGGCCCA
CAGGGACCAACCGGCGAAAACGGGCCTTCCGGTAACAGAGGACACCCAGGGCCGCCTGGA
CCAGCTGGCGAACCTGGCCTTTCCGGCTCCGCGGGCAAAGAAGGCTCCAAGGGTGACAGA
GGTCCGAGAGGACCCATAGGAAAAATGGGGGCAACTGGATCGCAGGGTTTCCCTGGGTCT
AGGGGCGCTAATGGGCCACCGGGGCCGCAGGGTGAGAACGGGAGCCCGGGTGGGCCAGGA
GGTCCGGGCCCAGCAGGCCGAGATGGTCTGCAGGGGCCTGTGGGGCTTCCAGGCGCACCG
GGATCCATCGGGCCACGCGGCGAAGATGGTGACAAGGGCGAAGCTGGGCCTCCTGGTGCA
ACCGGCCTCAAAGGTGGAAAGGGCGAGCACGGGCCACCTGGGCCGCCCGGCGTACAAGGA
AACAGCGGCGATCCTGGCCCACCGGGTAACGACGGAGAGCCAGGTCAAAGGGGTCAGCAA
GGTTTATACGGCGAAAAGGGTGATGAGGGACCCAGGGGATTTCCCGGTCCACCAGGACCC
CGCGGTTTGCAGGGGATTCCCGGGCCGTCAGGAAGCAAAGGAGATACCGGTGACGCTGGG
CCCTTGGGACCTGAGGGGCCACCTGGTACGTATGGTCAACCCGGCAACGTCGGCGACAAG
GGTGAACCTGGCGGACCCGGCGCTCCTGGAATTTCTGGTGAACCTGGACCCATGATGCAG
CCCCATAACCCCTTTTCACCCACACAGGGACCAAAAGGAGAAAACGGCGAAAAGGGTGAA
GCAGGTCTCACGGGGCCACAGGGCGAAGCTGGGCCTCGAGGGCCACGCGGCGACGACGGA
CCCAAAGGAAATCCTGGTCCAGTTGGTTTCCCTGGCGACCCCGGCGTATCTGGTATTCCT
GGAACCCCCGGAGACGAAGGAGTTCCCGGAGATGTTGGAGACACTGGAGCACCTGGCGAA
CCTGGGCCACCCGGACCAAGTGGCGAAGTGGGGCCATCCGGCGGACCAGGAAGACGCGGT
CCTGCTGGTCCCGCTGGTGCAGAAGGTCGACCTGGTGAAAAGGGGGCCAAGGTTAATTTT
TATTTTCAGGGCGAAAGCGGCGGAATCGGCCCCGTCGGCGAACCCGGGCCTCATGGGCTT
CAAGGAAAAACTGGAAAGAGAGGAACAACTGGACTTCAAGGTCTTCCTGGCCCAGCTGGC
GCTCCTGGTCTACCTGGCAGTTCTGGCGCAGACGGACCGGTTGGCCCCATGGGACCATCT
GGTTTGAAAGGAATCAAGGGAGAAATGGGCGTTTCTGGTGAAAAGGGTCACTCCGGTCAC
CCCGGTCTCATCGGGCTGGTCGGCCCCCCTGGGGAAGAGGGTGAGAAGGGTGAACGCGGT
CCACAGGGCCGCGATGGTCCACATGGAGCCAAGGGTGACGACGGCAGACCCGGGCCATCC
GGACCCGTTGGGCCAATGGGCGCACCCGGCTTACCGGGACCCACGGGACCTAAAGGAGAC
GAAGGTATCCAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTGTACAACGCGTCC
CCACTAACTGCGAATTCCATGAAGGCTCGAAGAAGAAGAAGTTTCATCGAGTACCCCGAA
GGCCTTGAGGAAATCTACGCGGCGATGGAAACGCTCAAACAGGAACTTGAAATGATGAAG
GAACCCATGGGGAGGACCCAGGATAACCCTGGGAGGAGCTGCAAGGATATCTGGCTCTGT
CACCCCGATTTCCCGTCAGGCAACTACTGGATTGATCCGAACGGAGGGTGTTCTGCGGAT
GCCATCGAAGTTTTCTGCGATTTCGAGGCGGAAGGCGACACTTGCATCTCACCAGTTGAG
CGAACCGCAACCAAGCGATGGCCGAAAGCACAACCTGGTGATTGGTTTAGCTCCTACAGG
ATGGGCGACAGGTTTGAATACAACACTAGCATCCCGCAATTCAACTTCCTGCGGTTGCTA
TCGTCGCAAGCGAAGCAAAGATTCACCTACAAGTGCGTCAACTCTATCGGCTGGGAGAAC
CAACAAACCGGTAGCTTCGACCAAGCCATCCACTTGCTTGCTGCTAACGATGAGGTTCTG
ACTTACGGTAGCGAACATCTTACGGTGATTGAGGATAACTGCAAGACCGGCCACGGAAAT
GGACAGGTGGTTCTAGAACTCCGTACGCGTGAGGTCGACCTCCTACCATTGTTCGATTAC
AAAGCTTTCGACTTTGGTACCCGCTCCCAACGACACGGATACCAACTCGATCGCGTTTGT
TTTAGCGGATGAATATAATCATGTCTTCACGAGCCACGTTTTGACGGGTGGCGCGCGCCG
CCGCACGGCTTCAGCGCCCGATCGGCGCGCTTATAAAGGAGAAGGGGTCTTCCCACAAGT
GCTGGTGCGGGAGCGCTCCCTCTCTTCTCGACGGATCCGGGAAAAAATACGAGAGAAGTC
ACGTGACCGCGGCGTCGTGTGTGCTGGCTCGACCCCGGCGTCACGCGGCCTCTCTCGTCC
A
| Pfam |
Collagen (IPR008160) - T[2-59] 2.6E-8 - T[224-280] 4.1E-9 - T[286-341] 1.5E-8 - T[329-385] 3.0E-8 - T[378-435] 1.0E-6 - T[600-654] 1.2E-7 - T[642-698] 5.5E-7 - T[710-767] 1.0E-8 - T[760-816] 3.7E-7 - T[824-878] 4.2E-7 - T[872-928] 2.6E-8 - T[917-975] 1.4E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1002-1222] 1.7E-77 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1003-1222] 73.696 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1003-1221] 5.6E-69 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1116-1221] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 54.596 % | 495 | 1.39E-150 |
| COBA1_HUMAN | 52.616 % | 592 | 0 |
| CO5A3_HUMAN | 48.206 % | 617 | 0 |