- Transcript 'KH2012:KH.L96.18.v2....' >
- Transcript 'Haaura.CG.MTP2014.S9...' >
- Transcript 'Harore.CG.MTP2014.S5...' >
- Transcript 'Cisavi.CG.ENS81.R77....' >
- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04416.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,587 / 1,586,469]
Amino acid sequence
Length: 1,333
>Cisavi.CG.ENS81.R143.1552530-1586469.04416.p
QGQKGAKGEQAVVEPGIFIPGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPG
EKGLPGPPGRHIMIPFRIAQPNGEKGPGSNAPAEMQAQLALTQARLAMQGPPGPQGLAGM
PGTAGDMGPAGIKGESGEPGPMGQRGPRGSMGPDGMPGKPGRVGEDGLRGEPGAMGSKGD
RGYDGLPGLPGPKGHRVSHVGPIGPPGGDGEQGEQGEAGPRGLPGEAGPRGEMGHKGPPG
VSGPPGPQGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLPGIPGADGAPGHPG
NEGPTGSKGSQGQPGPQGPQGYPGTRGVKGENGVRGIKGNKGEKGLDGLPGFKGDMGPKG
DTGIAGPTGSRGEDGPEGPKGREGARGELGPVGLTGEKGKIGVPGLPGYPGRSGIKGSLG
KPGKPGQMGLKGDRGLEGKRGQEGQRGPKGPRGKRGPRGSTGKAGPKGDRGQDGPQGPIG
ERGPPGPRGPSGYVGTKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTG
ENGPSGNRGHPGPPGPAGEPGLSGSAGKEGSKGDRGPRGPIGKMGATGSQGFPGSRGPQG
PVGAPGLKGSEGPPGPPGPLGAVGQRGPQGPAGQIGPAGSANGPPGPQGENGSPGGPGGP
GPAGRDGLQGPVGLPGAPGSIGPRGEDGDKGEAGPPGATGLKGGKGEHGPPGPPGVQGNS
GDPGPPGNDGEPGQRGQQGLYGEKGDEGPRGFPGPPGPRGLQGIPGPSGSKGDTGDAGPL
GPPGPAGQRGPPGGPEGPPGTYGQPGNVGDKGEPGGPGAPGISGEPGPMGPKGENGEKGE
AGLTGPQGEAGPRGPRGDDGPKGNPGPVGFPGDPGVSGIPGTPGDEGVPGDVGDTGAPGE
PGPPGPSGEVGPSGGPGRRGESGGIGPVGEPGPHGLQGKTGKRGTTGLQGLPGPAGAPGL
PGSSGADGPVGPMGPSGLKGIKGEMGVSGEKGHPGLIGLVGPPGEEGEKGERGPQGRDGP
HGAKGDDGRPGPSGPVGPMGAPGLPGSLGSKGNKGSLGPTGPKGDEGIQGPPGPPGPPGQ
VYNASPLTANSMKARRRRSTEEEGLHREKRQAQDESFIEYPEGLEEIYAAMETLKQELEM
MKEPMGRTQDNPGRSCKDIWLCHPDFPSGNYWIDPNGGCSADAIEVFCDFEAEGDTCISP
VERTASVSWLTCLSDPPLVCIPQFNFLRLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAI
HLLAANDEVLTYGSEHLTVIEDNCKTGHGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQ
RHGYQLDRVCFSG
Nucleotide sequence
Length: 4,243
>Cisavi.CG.ENS81.R143.1552530-1586469.04416.t
CAGGGCCAAAAAGGCGCAAAGGGTGAACAAGCAGTTGTAGAACCGGGGATATTTATTCCT
GGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAAGGGCCA
CCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGAGATGGGCTTCCCGGC
GAAAAAGGGCTTCCTGGGCCACCTGGTCGACACATTATGATACCGTTCCGAATCGCTCAA
CCCAATGGAGAAAAAGGACCCGGGTCAAATGCACCAGCTGAAATGCAAGCACAGCTTGCT
TTAACCCAAGCTAGGTTGGCGATGCAAGGGCCACCCGGGCCGCAGGGTCTTGCTGGAATG
CCCGGCACAGCAGGTGATATGGGGCCAGCTGGGATAAAGGGTGAATCAGGGGAACCAGGT
CCAATGGGCCAAAGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCT
GGAAGAGTGGGGGAAGACGGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGAC
AGAGGTTATGATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCATCGGGTGAGTCACGTT
GGTCCAATCGGACCACCAGGTGGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCA
CGTGGTTTACCTGGTGAAGCGGGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGC
GTATCCGGCCCACCTGGCCCACAAGGCGAACCGGGCCCCCCAGGCCAACAAGGCACATCC
GGGCCACAGGGTATTCCCGGCCCACAAGGTATGATGGGACCACCTGGCACCAAAGGGCCT
CACGGCAAAGCCGGCTTACCTGGCATACCGGGCGCAGACGGCGCACCCGGGCACCCGGGT
AACGAAGGTCCCACTGGCAGCAAAGGTTCCCAGGGTCAACCTGGGCCACAAGGACCACAA
GGCTACCCTGGAACACGAGGTGTTAAAGGAGAAAATGGAGTCAGAGGTATCAAGGGAAAC
AAAGGAGAGAAAGGTCTTGATGGGTTACCAGGATTCAAAGGGGATATGGGTCCTAAGGGT
GACACGGGAATTGCGGGGCCAACAGGCTCAAGAGGAGAAGACGGCCCAGAAGGACCCAAG
GGAAGAGAAGGGGCACGTGGAGAACTGGGTCCAGTCGGTCTCACTGGCGAAAAGGGTAAA
ATCGGAGTTCCCGGTCTTCCTGGCTATCCTGGTCGATCTGGAATCAAGGGGTCGCTTGGA
AAGCCTGGTAAACCGGGGCAGATGGGGCTGAAAGGGGACCGGGGTTTAGAAGGCAAACGA
GGCCAAGAAGGTCAAAGAGGTCCGAAGGGACCCAGAGGCAAACGGGGTCCTAGAGGATCA
ACTGGCAAAGCAGGACCCAAGGGCGACAGAGGACAAGACGGGCCGCAAGGACCAATCGGA
GAACGGGGGCCGCCTGGACCCAGAGGACCAAGTGGGTACGTTGGCACCAAAGGGCCACCG
GGTCCACCAGGGAAAGACGGGCTTCCAGGACATCCAGGAAGTCGTGGAGAAACTGGATTC
CAAGGCAAGACGGGGCCACCTGGACCAGCCGGCGTCGTCGGCCCACAGGGACCAACCGGC
GAAAACGGGCCTTCCGGTAACAGAGGACACCCAGGGCCGCCTGGACCAGCTGGCGAACCT
GGCCTTTCCGGCTCCGCGGGCAAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGACCC
ATAGGAAAAATGGGGGCAACTGGATCGCAGGGTTTCCCTGGGTCTAGGGGTCCACAGGGA
CCAGTGGGTGCTCCAGGCTTAAAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCATTG
GGCGCTGTCGGACAACGAGGGCCACAAGGACCCGCCGGGCAGATCGGACCAGCTGGAAGC
GCTAATGGGCCACCGGGGCCGCAGGGTGAGAACGGGAGCCCGGGTGGGCCAGGAGGTCCG
GGCCCAGCAGGCCGAGATGGTCTGCAGGGGCCTGTGGGGCTTCCAGGCGCACCGGGATCC
ATCGGGCCACGCGGCGAAGATGGTGACAAGGGCGAAGCTGGGCCTCCTGGTGCAACCGGC
CTCAAAGGTGGAAAGGGCGAGCACGGGCCACCTGGGCCGCCCGGCGTACAAGGAAACAGC
GGCGATCCTGGCCCACCGGGTAACGACGGAGAGCCAGGTCAAAGGGGTCAGCAAGGTTTA
TACGGCGAAAAGGGTGATGAGGGACCCAGGGGATTTCCCGGTCCACCAGGACCCCGCGGT
TTGCAGGGGATTCCCGGGCCGTCAGGAAGCAAAGGAGATACCGGTGACGCTGGGCCCTTG
GGGCCACCTGGACCGGCTGGACAACGAGGCCCCCCTGGTGGACCTGAGGGGCCACCTGGT
ACGTATGGTCAACCCGGCAACGTCGGCGACAAGGGTGAACCTGGCGGACCCGGCGCTCCT
GGAATTTCTGGTGAACCTGGACCCATGGGACCAAAAGGAGAAAACGGCGAAAAGGGTGAA
GCAGGTCTCACGGGGCCACAGGGCGAAGCTGGGCCTCGAGGGCCACGCGGCGACGACGGA
CCCAAAGGAAATCCTGGTCCAGTTGGTTTCCCTGGCGACCCCGGCGTATCTGGTATTCCT
GGAACCCCCGGAGACGAAGGAGTTCCCGGAGATGTTGGAGACACTGGAGCACCTGGCGAA
CCTGGGCCACCCGGACCAAGTGGCGAAGTGGGGCCATCCGGCGGACCAGGAAGACGCGGC
GAAAGCGGCGGAATCGGCCCCGTCGGCGAACCCGGGCCTCATGGGCTTCAAGGAAAAACT
GGAAAGAGAGGAACAACTGGACTTCAAGGTCTTCCTGGCCCAGCTGGCGCTCCTGGTCTA
CCTGGCAGTTCTGGCGCAGACGGACCGGTTGGCCCCATGGGACCATCTGGTTTGAAAGGA
ATCAAGGGAGAAATGGGCGTTTCTGGTGAAAAGGGTCACCCCGGTCTCATCGGGCTGGTC
GGCCCCCCTGGGGAAGAGGGTGAGAAGGGTGAACGCGGTCCACAGGGCCGCGATGGTCCA
CATGGAGCCAAGGGTGACGACGGCAGACCCGGGCCATCCGGACCCGTTGGGCCAATGGGC
GCACCCGGCTTACCGGGAAGCCTTGGTTCAAAGGGAAACAAAGGAAGTCTGGGACCCACG
GGACCTAAAGGAGACGAAGGTATCCAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAA
GTGTACAACGCGTCCCCACTAACTGCGAATTCCATGAAGGCTCGAAGAAGAAGATCTACA
GAAGAAGAGGGACTTCACCGTGAGAAGCGTCAAGCTCAAGACGAGAGTTTCATCGAGTAC
CCCGAAGGCCTTGAGGAAATCTACGCGGCGATGGAAACGCTCAAACAGGAACTTGAAATG
ATGAAGGAACCCATGGGGAGGACCCAGGATAACCCTGGGAGGAGCTGCAAGGATATCTGG
CTCTGTCACCCCGATTTCCCGTCAGGCAACTACTGGATTGATCCGAACGGAGGGTGTTCT
GCGGATGCCATCGAAGTTTTCTGCGATTTCGAGGCGGAAGGCGACACTTGCATCTCACCA
GTTGAGCGAACCGCAAGTGTAAGTTGGTTGACCTGTCTATCTGATCCACCTTTGGTCTGC
ATCCCGCAATTCAACTTCCTGCGGTTGCTATCGTCGCAAGCGAAGCAAAGATTCACCTAC
AAGTGCGTCAACTCTATCGGCTGGGAGAACCAACAAACCGGTAGCTTCGACCAAGCCATC
CACTTGCTTGCTGCTAACGATGAGGTTCTGACTTACGGTAGCGAACATCTTACGGTGATT
GAGGATAACTGCAAGACCGGCCACGGAAATGGACAGGTGGTTCTAGAACTCCGTACGCGT
GAGGTCGACCTCCTACCATTGTTCGATTACAAAGCTTTCGACTTTGGTACCCGCTCCCAA
CGACACGGATACCAACTCGATCGCGTTTGTTTTAGCGGATGAATATAATCATGTCTTCAC
GAGCCACGTTTTGACGGGTGGCGCGCGCCGCCGCACGGCTTCAGCGCCCGATCGGCGCGC
TTATAAAGGAGAAGGGGTCTTCCCACAAGTGCTGGTGCGGGAGCGCTCCCTCTCTTCTCG
ACGGATCCGGGAAAAAATACGAGAGAAGTCACGTGACCGCGGCGTCGTGTGTGCTGGCTC
GACCCCGGCGTCACGCGGCCTCTCTCGTCCAACCAAATTTTTC
| Pfam |
Collagen (IPR008160) - T[21-69] 3.8E-8 - T[109-162] 2.7E-8 - T[140-195] 7.2E-9 - T[201-256] 7.4E-8 - T[243-299] 1.4E-6 - T[290-345] 6.7E-7 - T[396-454] 2.9E-7 - T[489-547] 3.3E-8 - T[1022-1080] 2.0E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1124-1332] 1.4E-64 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1125-1205] 3.4E-30 - T[1221-1331] 7.0E-29 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1125-1332] 65.49 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1226-1331] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 57.049 % | 768 | 0 |
| COBA1_HUMAN | 58.053 % | 707 | 0 |
| CO5A3_HUMAN | 51.305 % | 680 | 0 |