- Transcript 'KH2012:KH.L96.18.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Region 'REG00000364' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04414.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,535 / 1,586,018]
Amino acid sequence
Length: 1,248
>Cisavi.CG.ENS81.R143.1552530-1586469.04414.p
GIFIPGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPGEKGLPGPPGRHIMIP
GDMGPAGIKGESGEPGPMGQRGPRGSMGPDGMPGKPGDRGYDGLPGLPGPKGHVGPIGPP
GGDGEQGEQGEAGPRGLPGEAGPRGEMGHKGPPGVSGPPGPRGVHGQQGPKGNLGPQGEP
GPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLPGIPGADGAPGHPGNEGPTGSKGSQ
GQPGPQGPQGYPGTRGVKGENGVRGIKGNKGEKGIAGPTGSRGEDGPEGPKGREGARGEL
GPVGLTGEKGKIGVPGLPGYPGRSGIKGSLGKPGKPGQMGLKGDRGSRGLIGRPGLRGLK
GKRGLEGKRGQEGQRGKRGPRGSTGKAGPKGPPGPRGPSGYVGTKGPPGPPGKDGLPGHP
GSRGETGFQGKTGPPGPAGVVGPQGPTGENGPSGNRGHPGPPVISPQGPAGEPGLSGSAG
KEGSKGDRGPRGPIGKMGATGSQGFPGSRGPQGPVGAPGLKGSEGPPGPPGPLGAVGQRG
PQGPAGQIGPAGSANGPPGPQGENGSPGGPGGPGPAGRDGLQGPVGLPGAPGSIGPRGED
GDKGEAGPPGATGLKGGKGEHGPPGPPGVQGNSGDPGPPGNDGEPGQRGQQGLYGEKGDE
GPRGFPGPPGPRGLQGIPGPSGSKGDTGDAGPLGPPGPAGQRGPPGGPEGPPGTYGQPGN
VGDKGPKGENGEKGEAGLTGPQGEAGPRGPRGDDGPKGNPGPVGFPGDPGVSGIPGTPGD
EGVPGDVGDTGAPGEPGPPGPSGEVGPSGGPGRRGPAGPAGAEGRPGEKGAKGESGGIGP
VGEPGPHGLQGKTGKRGTTGLQGLPGPAGAPGLPGSSGADGPVGPMGPSGLKGIKGEMGV
SGEKGHPGLIGLVGPPGEEGEKGERGPQGRDGPHGAKGDDGRPGPSGPVGPMGAPGLPGS
LGSKGNKGSLGPTGPKGDEGIQGPPGPPGPPGQVYNASPLTANSMKARRRRDESFIEYPE
GLEEIYAAMETLKQELEMMKEPMGRTQDNPGRSCKDIWLCHPDFPSGNYWIDPNGGCSAD
AIEVFCDFEAEGDTCISPVERTASVSWLTSKRWPKAQPGDWFSSYRMGDRFEYNTSIPQF
NFLRLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAIHLLAANDEVLTYGSEHLTVIEDNC
KTGHGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQRHGYQLDRVCFS
Nucleotide sequence
Length: 4,043
>Cisavi.CG.ENS81.R143.1552530-1586469.04414.t
GGGATATTTATTCCTGGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCG
GGCTTCCAAGGGCCACCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGA
GATGGGCTTCCCGGCGAAAAAGGGCTTCCTGGGCCACCTGGTCGACACATTATGATACCG
GGTGATATGGGGCCAGCTGGGATAAAGGGTGAATCAGGGGAACCAGGTCCAATGGGCCAA
AGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCTGGTGACAGAGGT
TATGATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCACGTTGGTCCAATCGGACCACCA
GGTGGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCACGTGGTTTACCTGGTGAA
GCGGGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGCGTATCCGGCCCACCTGGC
CCGAGAGGAGTCCATGGGCAACAAGGACCTAAAGGAAATCTGGGCCCACAAGGCGAACCG
GGCCCCCCAGGCCAACAAGGCACATCCGGGCCACAGGGTATTCCCGGCCCACAAGGTATG
ATGGGACCACCTGGCACCAAAGGGCCTCACGGCAAAGCCGGCTTACCTGGCATACCGGGC
GCAGACGGCGCACCCGGGCACCCGGGTAACGAAGGTCCCACTGGCAGCAAAGGTTCCCAG
GGTCAACCTGGGCCACAAGGACCACAAGGCTACCCTGGAACACGAGGTGTTAAAGGAGAA
AATGGAGTCAGAGGTATCAAGGGAAACAAAGGAGAGAAAGGAATTGCGGGGCCAACAGGC
TCAAGAGGAGAAGACGGCCCAGAAGGACCCAAGGGAAGAGAAGGGGCACGTGGAGAACTG
GGTCCAGTCGGTCTCACTGGCGAAAAGGGTAAAATCGGAGTTCCCGGTCTTCCTGGCTAT
CCTGGTCGATCTGGAATCAAGGGGTCGCTTGGAAAGCCTGGTAAACCGGGGCAGATGGGG
CTGAAAGGGGACCGGGGGTCGAGGGGGCTTATTGGACGGCCCGGACTTAGGGGTCTAAAG
GGAAAGAGGGGTTTAGAAGGCAAACGAGGCCAAGAAGGTCAAAGAGGCAAACGGGGTCCT
AGAGGATCAACTGGCAAAGCAGGACCCAAGGGGCCGCCTGGACCCAGAGGACCAAGTGGG
TACGTTGGCACCAAAGGGCCACCGGGTCCACCAGGGAAAGACGGGCTTCCAGGACATCCA
GGAAGTCGTGGAGAAACTGGATTCCAAGGCAAGACGGGGCCACCTGGACCAGCCGGCGTC
GTCGGCCCACAGGGACCAACCGGCGAAAACGGGCCTTCCGGTAACAGAGGACACCCAGGG
CCGCCTGTAATTTCACCACAGGGACCAGCTGGCGAACCTGGCCTTTCCGGCTCCGCGGGC
AAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGACCCATAGGAAAAATGGGGGCAACT
GGATCGCAGGGTTTCCCTGGGTCTAGGGGTCCACAGGGACCAGTGGGTGCTCCAGGCTTA
AAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCATTGGGCGCTGTCGGACAACGAGGG
CCACAAGGACCCGCCGGGCAGATCGGACCAGCTGGAAGCGCTAATGGGCCACCGGGGCCG
CAGGGTGAGAACGGGAGCCCGGGTGGGCCAGGAGGTCCGGGCCCAGCAGGCCGAGATGGT
CTGCAGGGGCCTGTGGGGCTTCCAGGCGCACCGGGATCCATCGGGCCACGCGGCGAAGAT
GGTGACAAGGGCGAAGCTGGGCCTCCTGGTGCAACCGGCCTCAAAGGTGGAAAGGGCGAG
CACGGGCCACCTGGGCCGCCCGGCGTACAAGGAAACAGCGGCGATCCTGGCCCACCGGGT
AACGACGGAGAGCCAGGTCAAAGGGGTCAGCAAGGTTTATACGGCGAAAAGGGTGATGAG
GGACCCAGGGGATTTCCCGGTCCACCAGGACCCCGCGGTTTGCAGGGGATTCCCGGGCCG
TCAGGAAGCAAAGGAGATACCGGTGACGCTGGGCCCTTGGGGCCACCTGGACCGGCTGGA
CAACGAGGCCCCCCTGGTGGACCTGAGGGGCCACCTGGTACGTATGGTCAACCCGGCAAC
GTCGGCGACAAGGGACCAAAAGGAGAAAACGGCGAAAAGGGTGAAGCAGGTCTCACGGGG
CCACAGGGCGAAGCTGGGCCTCGAGGGCCACGCGGCGACGACGGACCCAAAGGAAATCCT
GGTCCAGTTGGTTTCCCTGGCGACCCCGGCGTATCTGGTATTCCTGGAACCCCCGGAGAC
GAAGGAGTTCCCGGAGATGTTGGAGACACTGGAGCACCTGGCGAACCTGGGCCACCCGGA
CCAAGTGGCGAAGTGGGGCCATCCGGCGGACCAGGAAGACGCGGTCCTGCTGGTCCCGCT
GGTGCAGAAGGTCGACCTGGTGAAAAGGGGGCCAAGGGCGAAAGCGGCGGAATCGGCCCC
GTCGGCGAACCCGGGCCTCATGGGCTTCAAGGAAAAACTGGAAAGAGAGGAACAACTGGA
CTTCAAGGTCTTCCTGGCCCAGCTGGCGCTCCTGGTCTACCTGGCAGTTCTGGCGCAGAC
GGACCGGTTGGCCCCATGGGACCATCTGGTTTGAAAGGAATCAAGGGAGAAATGGGCGTT
TCTGGTGAAAAGGGTCACCCCGGTCTCATCGGGCTGGTCGGCCCCCCTGGGGAAGAGGGT
GAGAAGGGTGAACGCGGTCCACAGGGCCGCGATGGTCCACATGGAGCCAAGGGTGACGAC
GGCAGACCCGGGCCATCCGGACCCGTTGGGCCAATGGGCGCACCCGGCTTACCGGGAAGC
CTTGGTTCAAAGGGAAACAAAGGAAGTCTGGGACCCACGGGACCTAAAGGAGACGAAGGT
ATCCAGGGGCCACCAGGACCACCAGGGCCACCGGGGCAAGTGTACAACGCGTCCCCACTA
ACTGCGAATTCCATGAAGGCTCGAAGAAGAAGAGACGAGAGTTTCATCGAGTACCCCGAA
GGCCTTGAGGAAATCTACGCGGCGATGGAAACGCTCAAACAGGAACTTGAAATGATGAAG
GAACCCATGGGGAGGACCCAGGATAACCCTGGGAGGAGCTGCAAGGATATCTGGCTCTGT
CACCCCGATTTCCCGTCAGGCAACTACTGGATTGATCCGAACGGAGGGTGTTCTGCGGAT
GCCATCGAAGTTTTCTGCGATTTCGAGGCGGAAGGCGACACTTGCATCTCACCAGTTGAG
CGAACCGCAAGTGTAAGTTGGTTGACCTCCAAGCGATGGCCGAAAGCACAACCTGGTGAT
TGGTTTAGCTCCTACAGGATGGGCGACAGGTTTGAATACAACACTAGCATCCCGCAATTC
AACTTCCTGCGGTTGCTATCGTCGCAAGCGAAGCAAAGATTCACCTACAAGTGCGTCAAC
TCTATCGGCTGGGAGAACCAACAAACCGGTAGCTTCGACCAAGCCATCCACTTGCTTGCT
GCTAACGATGAGGTTCTGACTTACGGTAGCGAACATCTTACGGTGATTGAGGATAACTGC
AAGACCGGCCACGGAAATGGACAGGTGGTTCTAGAACTCCGTACGCGTGAGGTCGACCTC
CTACCATTGTTCGATTACAAAGCTTTCGACTTTGGTACCCGCTCCCAACGACACGGATAC
CAACTCGATCGCGTTTGTTTTAGCGGATGAATATAATCATGTCTTCACGAGCCACGTTTT
GACGGGTGGCGCGCGCCGCCGCACGGCTTCAGCGCCCGATCGGCGCGCTTATAAAGGAGA
AGGGGTCTTCCCACAAGTGCTGGTGCGGGAGCGCTCCCTCTCTTCTCGACGGATCCGGGA
AAAAATACGAGAGAAGTCACGTGACCGCGGCGTCGTGTGTGCTGGCTCGACCCCGGCGTC
ACGCGGCCTCTCTCGTCCAACCAAATTTTTCAGTGGGAAGCAAAGGCTGTGACGTCATCA
GTATTACGTATTGCATCACTGTT
| Pfam |
Collagen (IPR008160) - T[6-54] 3.5E-8 - T[60-115] 3.3E-8 - T[109-161] 1.7E-6 - T[403-461] 5.4E-9 - T[467-521] 8.3E-8 - T[935-993] 2.2E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1022-1248] 2.0E-76 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1023-1248] 73.863 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1023-1247] 6.3E-69 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1142-1247] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 52.567 % | 639 | 0 |
| COBA1_HUMAN | 54.308 % | 624 | 0 |
| CO5A3_HUMAN | 50.304 % | 630 | 0 |