- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Region 'REG00000364' >
- Transcript 'Phmamm.CG.MTP2014.S1...' >
- Transcript 'Cisavi.CG.ENS81.R143...' >
- Transcript 'Cisavi.CG.ENS81.R143...'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R143.1552530-1586469.04413.t
Possible name(s)
COL11A2
Gene model
Location
R143 [1,552,530 / 1,586,009]
Amino acid sequence
Length: 1,327
>Cisavi.CG.ENS81.R143.1552530-1586469.04413.p
IPGPPGPPGDPGLDGPPGFQGPPGGPGEYGDRGPPGRDGLPGEKGLPGPPGRHIMIPFRI
AQPNGEKGPGSNAPAEMQAQLALTQARVRPPGPQGLAGMPGTAGDMGPAGIKGESGEPGP
MGQRGPRGSMGPDGMPGKPGRVGEDGLRGEPGAMGSKGDRGYDGLPGLPGPKGHRVSHVG
PIGPPGGDGEQGEQGEAGPRGLPGEAGPRGEMGHKGPPGVSGPPGPRGVHGQQGPKGNLV
NPFLSFQGPQGEPGPPGQQGTSGPQGIPGPQGMMGPPGTKGPHGKAGLPGIPGADGAPGH
PGNEGPTGSKGSQGQPGPQGPQGYPGTRGVKGNKGEKGLDGLPGFKGDMGPKGDTGIAGP
TGSRGEDGPEGPKGREGARGELGPVGLTGEKGKIGVPGLPGYPGRSGIKGSLGKPGKPGQ
MGLKGDRGSRGLIGRPGLRGLKGKRGLEGKRGQEGQRGPKGPRGKRGPRGSTGKAGPKGP
PGPRGPSGYVGTKGPPGPPGKDGLPGHPGSRGETGFQGKTGPPGPAGVVGPQGPTGENGP
SGNRGHPGPPGPAGEPGLSGSAGKEGSKGDRGPRGPIGKMGATGSQGFPGSRGPQGPVGA
PGLKGSEGPPGPPGPLGAVGQRGPQGPAGQIGPAGSANGPPGPQGENGSPGGPGGPGPAG
RDGLQGPVGLPGAPGSIGPRGEDGDKGEAGPPGATGLKGGKGEHGPPGPPGVQGNSGDPG
PPGNDGEPGQRGQQGLYGEKGDEGPRGFPGPPGPRGLQGIPGPSGSKGDTGDAGPLGPPG
PAGQRGPPGGPEGPPGTYGQPGNVGDKGEPGGPGAPGISGEPGPMGPKGENGEKGEAGLT
GPQGEAGPRGPRGDDGPKGNPGPVGFPGDPGVSGIPGTPGDEGVPGDVGDTGAPGEPGPP
GPSGEVGPSGGPGRRGPAGPAGAEGRPGEKGAKGESGGIGPVGEPGPHGLQGKTGKRGTT
GLQGLPGPAGAPGLPGSSGADGPVGPMGPSGLKGIKGEMGVSGEKGHPGLIGLVGPPGEE
GEKGERGPQGRDGPHGAKGDDGRPGPSGPVGPMGAPGLPGPTGPKGDEGIQGPPGPPGPP
GQVYNASPLTANSMKARRRRYPEGLEEIYAAMETLKQELEMMKEPMGRTQDNPGRSCKDI
WLCHPDFPSGNYWIDPNGGCSADAIEVFCDFEAEGDTCISPVERTASVTKRWPKAQPGDW
FSSYRMGDRFEYNTSIPQFNFLRLLSSQAKQRFTYKCVNSIGWENQQTGSFDQAIHLLAA
NDEVLTYGSEHLTVIEDNCKTGHGNGQVVLELRTREVDLLPLFDYKAFDFGTRSQRHGYQ
LDRVCFS
Nucleotide sequence
Length: 4,285
>Cisavi.CG.ENS81.R143.1552530-1586469.04413.t
ATTCCTGGACCACCAGGACCTCCAGGAGATCCGGGTCTCGACGGGCCACCGGGCTTCCAA
GGGCCACCGGGAGGACCTGGCGAATATGGCGACCGGGGACCTCCTGGCAGAGATGGGCTT
CCCGGCGAAAAAGGGCTTCCTGGGCCACCTGGTCGACACATTATGATACCGTTCCGAATC
GCTCAACCCAATGGAGAAAAAGGACCCGGGTCAAATGCACCAGCTGAAATGCAAGCACAG
CTTGCTTTAACCCAAGCTAGGGTAAGGCCACCCGGGCCGCAGGGTCTTGCTGGAATGCCC
GGCACAGCAGGTGATATGGGGCCAGCTGGGATAAAGGGTGAATCAGGGGAACCAGGTCCA
ATGGGCCAAAGGGGACCACGAGGATCAATGGGACCAGATGGCATGCCTGGAAAACCTGGA
AGAGTGGGGGAAGACGGGTTACGTGGTGAACCAGGTGCCATGGGGTCAAAGGGTGACAGA
GGTTATGATGGGTTGCCAGGGTTACCAGGCCCCAAGGGTCATCGGGTGAGTCACGTTGGT
CCAATCGGACCACCAGGTGGTGACGGGGAGCAGGGTGAACAAGGAGAGGCAGGACCACGT
GGTTTACCTGGTGAAGCGGGCCCACGTGGAGAAATGGGGCACAAAGGGCCACCCGGCGTA
TCCGGCCCACCTGGCCCGAGAGGAGTCCATGGGCAACAAGGACCTAAAGGAAATCTGGTG
AACCCATTTCTTTCATTTCAGGGCCCACAAGGCGAACCGGGCCCCCCAGGCCAACAAGGC
ACATCCGGGCCACAGGGTATTCCCGGCCCACAAGGTATGATGGGACCACCTGGCACCAAA
GGGCCTCACGGCAAAGCCGGCTTACCTGGCATACCGGGCGCAGACGGCGCACCCGGGCAC
CCGGGTAACGAAGGTCCCACTGGCAGCAAAGGTTCCCAGGGTCAACCTGGGCCACAAGGA
CCACAAGGCTACCCTGGAACACGAGGTGTTAAAGGAAACAAAGGAGAGAAAGGTCTTGAT
GGGTTACCAGGATTCAAAGGGGATATGGGTCCTAAGGGTGACACGGGAATTGCGGGGCCA
ACAGGCTCAAGAGGAGAAGACGGCCCAGAAGGACCCAAGGGAAGAGAAGGGGCACGTGGA
GAACTGGGTCCAGTCGGTCTCACTGGCGAAAAGGGTAAAATCGGAGTTCCCGGTCTTCCT
GGCTATCCTGGTCGATCTGGAATCAAGGGGTCGCTTGGAAAGCCTGGTAAACCGGGGCAG
ATGGGGCTGAAAGGGGACCGGGGGTCGAGGGGGCTTATTGGACGGCCCGGACTTAGGGGT
CTAAAGGGAAAGAGGGGTTTAGAAGGCAAACGAGGCCAAGAAGGTCAAAGAGGTCCGAAG
GGACCCAGAGGCAAACGGGGTCCTAGAGGATCAACTGGCAAAGCAGGACCCAAGGGGCCG
CCTGGACCCAGAGGACCAAGTGGGTACGTTGGCACCAAAGGGCCACCGGGTCCACCAGGG
AAAGACGGGCTTCCAGGACATCCAGGAAGTCGTGGAGAAACTGGATTCCAAGGCAAGACG
GGGCCACCTGGACCAGCCGGCGTCGTCGGCCCACAGGGACCAACCGGCGAAAACGGGCCT
TCCGGTAACAGAGGACACCCAGGGCCGCCTGGACCAGCTGGCGAACCTGGCCTTTCCGGC
TCCGCGGGCAAAGAAGGCTCCAAGGGTGACAGAGGTCCGAGAGGACCCATAGGAAAAATG
GGGGCAACTGGATCGCAGGGTTTCCCTGGGTCTAGGGGTCCACAGGGACCAGTGGGTGCT
CCAGGCTTAAAGGGCAGCGAAGGGCCACCAGGACCACCAGGCCCATTGGGCGCTGTCGGA
CAACGAGGGCCACAAGGACCCGCCGGGCAGATCGGACCAGCTGGAAGCGCTAATGGGCCA
CCGGGGCCGCAGGGTGAGAACGGGAGCCCGGGTGGGCCAGGAGGTCCGGGCCCAGCAGGC
CGAGATGGTCTGCAGGGGCCTGTGGGGCTTCCAGGCGCACCGGGATCCATCGGGCCACGC
GGCGAAGATGGTGACAAGGGCGAAGCTGGGCCTCCTGGTGCAACCGGCCTCAAAGGTGGA
AAGGGCGAGCACGGGCCACCTGGGCCGCCCGGCGTACAAGGAAACAGCGGCGATCCTGGC
CCACCGGGTAACGACGGAGAGCCAGGTCAAAGGGGTCAGCAAGGTTTATACGGCGAAAAG
GGTGATGAGGGACCCAGGGGATTTCCCGGTCCACCAGGACCCCGCGGTTTGCAGGGGATT
CCCGGGCCGTCAGGAAGCAAAGGAGATACCGGTGACGCTGGGCCCTTGGGGCCACCTGGA
CCGGCTGGACAACGAGGCCCCCCTGGTGGACCTGAGGGGCCACCTGGTACGTATGGTCAA
CCCGGCAACGTCGGCGACAAGGGTGAACCTGGCGGACCCGGCGCTCCTGGAATTTCTGGT
GAACCTGGACCCATGGGACCAAAAGGAGAAAACGGCGAAAAGGGTGAAGCAGGTCTCACG
GGGCCACAGGGCGAAGCTGGGCCTCGAGGGCCACGCGGCGACGACGGACCCAAAGGAAAT
CCTGGTCCAGTTGGTTTCCCTGGCGACCCCGGCGTATCTGGTATTCCTGGAACCCCCGGA
GACGAAGGAGTTCCCGGAGATGTTGGAGACACTGGAGCACCTGGCGAACCTGGGCCACCC
GGACCAAGTGGCGAAGTGGGGCCATCCGGCGGACCAGGAAGACGCGGTCCTGCTGGTCCC
GCTGGTGCAGAAGGTCGACCTGGTGAAAAGGGGGCCAAGGGCGAAAGCGGCGGAATCGGC
CCCGTCGGCGAACCCGGGCCTCATGGGCTTCAAGGAAAAACTGGAAAGAGAGGAACAACT
GGACTTCAAGGTCTTCCTGGCCCAGCTGGCGCTCCTGGTCTACCTGGCAGTTCTGGCGCA
GACGGACCGGTTGGCCCCATGGGACCATCTGGTTTGAAAGGAATCAAGGGAGAAATGGGC
GTTTCTGGTGAAAAGGGTCACCCCGGTCTCATCGGGCTGGTCGGCCCCCCTGGGGAAGAG
GGTGAGAAGGGTGAACGCGGTCCACAGGGCCGCGATGGTCCACATGGAGCCAAGGGTGAC
GACGGCAGACCCGGGCCATCCGGACCCGTTGGGCCAATGGGCGCACCCGGCTTACCGGGA
CCCACGGGACCTAAAGGAGACGAAGGTATCCAGGGGCCACCAGGACCACCAGGGCCACCG
GGGCAAGTGTACAACGCGTCCCCACTAACTGCGAATTCCATGAAGGCTCGAAGAAGAAGA
TACCCCGAAGGCCTTGAGGAAATCTACGCGGCGATGGAAACGCTCAAACAGGAACTTGAA
ATGATGAAGGAACCCATGGGGAGGACCCAGGATAACCCTGGGAGGAGCTGCAAGGATATC
TGGCTCTGTCACCCCGATTTCCCGTCAGGCAACTACTGGATTGATCCGAACGGAGGGTGT
TCTGCGGATGCCATCGAAGTTTTCTGCGATTTCGAGGCGGAAGGCGACACTTGCATCTCA
CCAGTTGAGCGAACCGCAAGTGTAACCAAGCGATGGCCGAAAGCACAACCTGGTGATTGG
TTTAGCTCCTACAGGATGGGCGACAGGTTTGAATACAACACTAGCATCCCGCAATTCAAC
TTCCTGCGGTTGCTATCGTCGCAAGCGAAGCAAAGATTCACCTACAAGTGCGTCAACTCT
ATCGGCTGGGAGAACCAACAAACCGGTAGCTTCGACCAAGCCATCCACTTGCTTGCTGCT
AACGATGAGGTTCTGACTTACGGTAGCGAACATCTTACGGTGATTGAGGATAACTGCAAG
ACCGGCCACGGAAATGGACAGGTGGTTCTAGAACTCCGTACGCGTGAGGTCGACCTCCTA
CCATTGTTCGATTACAAAGCTTTCGACTTTGGTACCCGCTCCCAACGACACGGATACCAA
CTCGATCGCGTTTGTTTTAGCGGATGAATATAATCATGTCTTCACGAGCCACGTTTTGAC
GGGTGGCGCGCGCCGCCGCACGGCTTCAGCGCCCGATCGGCGCGCTTATAAAGGAGAAGG
GGTCTTCCCACAAGTGCTGGTGCGGGAGCGCTCCCTCTCTTCTCGACGGATCCGGGAAAA
AATACGAGAGAAGTCACGTGACCGCGGCGTCGTGTGTGCTGGCTCGACCCCGGCGTCACG
CGGCCTCTCTCGTCCAACCAAATTTTTCAGTGGGAAGCAAAGGCTGTGACGTCATCAGTA
TTACGTATTGCATCACTGTTTGTTC
| Pfam |
Collagen (IPR008160) - T[3-51] 3.8E-8 - T[91-146] 3.0E-8 - T[116-174] 9.9E-8 - T[180-237] 5.9E-8 - T[247-303] 5.1E-9 - T[296-353] 1.7E-7 - T[350-398] 2.6E-7 - T[398-456] 1.3E-7 - T[449-506] 3.8E-7 - T[732-790] 5.5E-8 - T[988-1046] 2.2E-6 - T[1024-1082] 2.1E-8 |
| SMART |
Fib_collagen_C (IPR000885) - T[1105-1327] 1.3E-74 |
| Pfam |
Fib_collagen_C (IPR000885) - T[1106-1326] 2.2E-70 |
| ProSiteProfiles |
Fib_collagen_C (IPR000885) - T[1106-1327] 73.553 |
| ProDom |
Fib_collagen_C (IPR000885) - T[1221-1326] 1.0E-18 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COBA2_HUMAN | 59.963 % | 572 | 1.22E-177 |
| COBA1_HUMAN | 56.889 % | 684 | 0 |
| CO5A3_HUMAN | 52.492 % | 691 | 0 |