- Transcript 'Haaura.CG.MTP2014.S3...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C3.148.v3....' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R14....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R14.1396421-1414605.18978.t
Possible name(s)
POC1A; POC1B; RACK1
Gene model
Location
R14 [1,411,056 / 1,414,574]
Amino acid sequence
Length: 283
>Cisavi.CG.ENS81.R14.1396421-1414605.18978.p
TMATEQMTLRGTLKGHKGWVTKIATTAIPEMILSASRDKSLIVWKLTRDENTYGVMNRRL
CGHSHFVSDVVISSDGQFALSGSWDSDLRLWNLQQGITTRRFCGHTKDVMSVAFSGDNRQ
IISASRDGTIKLWNTLGQCKYTIMDSHTDWVSCVQFSPNPNTPIIVSSGWDKVVKKLLCR
CIYLQHGYSGKHLYTLSNGDNEIHALAFSPNRYWLCAACGPTIKIWDLEGKALLDELRPE
LINLNSKAGQPECLSLAWSPDGQTLFAGYTDNLIRVWQVSILA
Nucleotide sequence
Length: 933
>Cisavi.CG.ENS81.R14.1396421-1414605.18978.t
CTATCGTAGGTTAGTTGGTACCTTTATCTGTTGGAATCTGACGAAACACAGATTCAATTT
TGAACTATGGCAACGGAACAAATGACCCTTAGGGGTACACTTAAAGGCCACAAAGGATGG
GTAACAAAAATTGCCACAACCGCTATTCCTGAAATGATTTTGTCTGCTTCTAGAGACAAG
TCATTAATTGTGTGGAAACTAACTCGCGATGAGAACACGTATGGTGTGATGAACAGACGA
TTGTGCGGACATTCTCACTTTGTATCGGATGTTGTCATCTCTTCCGATGGTCAGTTTGCT
CTCTCTGGATCATGGGATTCAGATTTGAGACTGTGGAACCTGCAGCAGGGAATAACCACT
CGTCGGTTCTGTGGACATACCAAAGATGTCATGTCCGTTGCATTTTCTGGTGACAACAGA
CAGATTATTTCTGCTTCCCGAGACGGAACAATCAAGTTGTGGAACACACTCGGACAGTGC
AAATATACCATCATGGATAGCCATACTGATTGGGTGTCATGTGTTCAATTTTCACCAAAC
CCCAATACTCCAATCATTGTATCAAGTGGCTGGGATAAAGTTGTAAAGAAACTTTTGTGC
CGGTGTATTTATCTGCAACATGGATACTCAGGTAAACATCTTTACACACTGAGCAATGGG
GACAATGAGATCCACGCACTCGCTTTCTCGCCCAACCGATACTGGCTATGTGCTGCTTGT
GGACCAACTATCAAGATTTGGGATTTGGAAGGCAAAGCTCTACTTGATGAATTGCGACCC
GAGCTGATCAACCTGAACAGCAAAGCTGGCCAACCTGAATGCCTGTCTTTAGCATGGTCA
CCAGATGGACAGACTCTTTTCGCTGGTTATACTGACAACCTTATCCGAGTATGGCAAGTA
TCAATCTTGGCCAGTCAGTCCGCACAATAATGT
| SMART |
WD40_repeat (IPR001680) - T[6-45] 3.1E-4 - T[53-92] 7.9E-4 - T[95-134] 2.5E-9 - T[136-178] 0.055 - T[189-227] 0.0059 - T[238-278] 0.041 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[6-279] 4.89E-57 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[10-282] 3.3E-93 |
| Pfam |
WD40_repeat (IPR001680) - T[10-45] 0.016 - T[59-92] 1.7E-5 - T[99-134] 8.1E-8 - T[138-175] 0.0055 - T[191-227] 4.4E-5 - T[255-277] 8.1E-4 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[13-283] 38.441 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[13-54] 11.21 - T[60-101] 13.416 - T[102-134] 15.087 - T[255-283] 10.709 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[32-46] 2.2E-6 - T[79-93] 2.2E-6 - T[121-135] 2.2E-6 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[79-93] . - T[121-135] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 29.577 % | 98.6 | 7.52E-24 |
| WDR5B_HUMAN | 30.909 % | 99 | 4.07E-24 |
| RACK1_HUMAN | 65.924 % | 393 | 8.1E-139 |