- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C3.425.v2....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Cisavi.CG.ENS81.R14....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R14.1396421-1414605.18976.t
Possible name(s)
POC1A; POC1B; RACK1
Gene model
Location
R14 [1,396,420 / 1,414,605]
Amino acid sequence
Length: 293
>Cisavi.CG.ENS81.R14.1396421-1414605.18976.p
MILSASRDKSLIVWKLTRDENTYGVMNRRLCGHSHFVSDVVISSDGQFALSGSWDSDLRL
WNLQQGITTRRFCGHTKDVMSVAFSGDNRQIISASRDGTIKLWNTLGQCKYTIMEDSHTD
WVSCVQFSPNPNTPIIVSSGWDKVVKVWNLTNCKLKTNHYGHTAFINSVTVSPDGSLCAS
GGKDGQAMLWDLSEGKHLYTLSNGDNEIHALAFSPNRYWLCAACGPTIKIWDLEGKALLD
ELRPELINLNSKAGQPECLSLAWSPDGQTLFAGYTDNLIRVWQVSILASQSAQ
Nucleotide sequence
Length: 1,098
>Cisavi.CG.ENS81.R14.1396421-1414605.18976.t
TTACAAATAAAAAAAGTTATGGTGGCTATCGTAGGTTAGTTGGTACCTTTATCTGTTGGA
ATCTGACGAAACACAGATTCAATTTTGAACTATGGCAACGGAACAAATGACCCTTAGGGG
TACACTTAAAGGCCACAAAGGATGGGTAACAAAAATTGCCACAACCCCCCGCTATTCCTG
AAATGATTTTGTCTGCTTCTAGAGACAAGTCATTAATTGTGTGGAAACTAACTCGCGATG
AGAACACGTATGGTGTGATGAACAGACGATTGTGCGGACATTCTCACTTTGTATCGGATG
TTGTCATCTCTTCCGATGGTCAGTTTGCTCTCTCTGGATCATGGGATTCAGATTTGAGAC
TGTGGAACCTGCAGCAGGGAATAACCACTCGTCGGTTCTGTGGACATACCAAAGATGTCA
TGTCCGTTGCATTTTCTGGTGACAACAGACAGATTATTTCTGCTTCCCGAGACGGAACAA
TCAAGTTGTGGAACACACTCGGACAGTGCAAATATACCATCATGGAGGATAGCCATACTG
ATTGGGTGTCATGTGTTCAATTTTCACCAAACCCCAATACTCCAATCATTGTATCAAGTG
GCTGGGATAAAGTTGTAAAGGTGTGGAACCTCACCAACTGCAAGCTGAAGACCAACCATT
ACGGCCACACTGCCTTCATTAACTCAGTGACTGTCTCTCCTGACGGTTCCCTTTGTGCAT
CTGGTGGTAAAGATGGTCAAGCCATGCTATGGGATCTTAGTGAAGGTAAACATCTTTACA
CACTGAGCAATGGGGACAATGAGATCCACGCACTCGCTTTCTCGCCCAACCGATACTGGC
TATGTGCTGCTTGTGGACCAACTATCAAGATTTGGGATTTGGAAGGCAAAGCTCTACTTG
ATGAATTGCGACCCGAGCTGATCAACCTGAACAGCAAAGCTGGCCAACCTGAATGCCTGT
CTTTAGCATGGTCACCAGATGGACAGACTCTTTTCGCTGGTTATACTGACAACCTTATCC
GAGTATGGCAAGTATCAATCTTGGCCAGTCAGTCCGCACAATAATGTGGAAATAAATAAT
ATAAAAACCGAAAACAGA
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[1-292] 55.261 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[1-24] 8.938 - T[30-71] 13.416 - T[72-104] 15.087 - T[115-158] 11.979 - T[159-200] 14.92 - T[260-285] 10.375 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[1-288] 2.1E-120 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[2-283] 1.32E-69 |
| SMART |
WD40_repeat (IPR001680) - T[23-62] 7.9E-4 - T[65-104] 2.5E-9 - T[106-149] 1.4E-7 - T[152-191] 2.5E-8 - T[194-232] 0.011 - T[243-283] 0.041 |
| Pfam |
WD40_repeat (IPR001680) - T[29-62] 1.8E-5 - T[69-104] 8.5E-8 - T[109-149] 1.5E-5 - T[159-191] 1.3E-6 - T[196-232] 4.7E-5 - T[260-282] 8.5E-4 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[49-63] . - T[91-105] . - T[136-150] . - T[178-192] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[91-105] 1.4E-7 - T[136-150] 1.4E-7 - T[178-192] 1.4E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 31.154 % | 118 | 5.04E-31 |
| WDR5B_HUMAN | 30.483 % | 119 | 1.55E-31 |
| RACK1_HUMAN | 76.923 % | 463 | 3.79E-166 |