- Transcript 'Cisavi.CG.ENS81.R113...' >
- Transcript 'KH2012:KH.C10.73.v3....' >
- Transcript 'KH2012:KH.C1.96.v1.A...' >
- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Transcript 'Cisavi.CG.ENS81.R14....'
Transcript Model
Transcript Id
Cisavi.CG.ENS81.R14.1028656-1037772.18303.t
Possible name(s)
COPA; COPB2; PAFAH1B1
Gene model
Location
R14 [1,029,008 / 1,035,875]
Amino acid sequence
Length: 818
>Cisavi.CG.ENS81.R14.1028656-1037772.18303.p
LRLDIKRKLNARSDRVKCVDLHPTEPWMLVSLYNGNVHIWNHETQVLVKSFEICDLPVRA
TRFVPRKNWVITGSDDMQVRVFNYNTLERTHAFEAHTDYIRSIAVHPTQPYILTSSDDML
IKLWDWDKKWSCAQVFEGHTHYVMQIVINPKDNNQFASASLDCSIKVWQLGSATPNFTLT
GHDKGVNCVDYYSGGDKPYLISGADDRLTKIWDYQNKTCVQTLEGHSQNIVCVSFHPELP
IIMTGSEDGTIKIWHANTYRLETTLNYGMERVWCISAMKGSNNIALGYDEGSIMIKLGRE
EPAMSMDGSGKIIWAKHSEIQQANLKAMADQDLKDGERLQLSVKDMGSCEVYPQTLKHNA
NGRFVVVCGDGEYIIYTAMALRNKAFGSALEFTWAQDSSEYAVRESGTSVKLFKNFKERK
SFKPDFGAEGIFGGHLLGVRTSQGLAFYDWEHLELVRRIEINPKNVFWSDNGDLVCITAD
ESFYILKYDQSKIEESKENTDLVTEDGITDAFSDVEEVVKTGLWVGDCFIYTNAVNRLNY
YVGGEIVTIAHLDRVLYLLGYIPSDNRLYLGDKELNVVSYSLLLSVLEYQTAVMREDFET
ADKVLPSIPKEQRTRVAHFLEKQIEINFPPYNKTEVPATRNYYYLHGFKPQAMAVTSDSE
HKFELALGLGDLKIAYQLAQEAQVIISTLVPMTAEQKWKQLAELATRKCEFGLAQECLRQ
AQDFGGLLLLATSAGNSTMVKSLADNAKAGGKNNVAFLSYFVTGQTDKCLELLISTNRLP
EAAFFARTYLPSQVSRVVQLWKVNLGESNKKAADALAD
Nucleotide sequence
Length: 2,454
>Cisavi.CG.ENS81.R14.1028656-1037772.18303.t
TTACGCTTGGACATTAAGAGGAAATTAAATGCGAGGTCGGATCGAGTGAAATGTGTTGAT
CTCCATCCAACTGAGCCATGGATGTTAGTTTCACTTTACAATGGTAATGTTCACATTTGG
AACCATGAAACTCAAGTCTTGGTCAAATCTTTTGAAATATGTGATCTTCCTGTCAGAGCC
ACCCGTTTCGTTCCTCGTAAAAACTGGGTGATCACTGGTTCGGATGACATGCAAGTTCGT
GTGTTTAACTACAACACGCTGGAGCGAACCCACGCATTTGAAGCGCACACAGATTACATC
CGTTCTATCGCTGTGCATCCGACACAGCCTTATATATTAACCAGCAGTGACGACATGCTG
ATAAAATTATGGGATTGGGACAAGAAATGGAGCTGTGCACAAGTGTTTGAAGGCCACACA
CACTATGTCATGCAAATTGTCATCAATCCAAAAGATAACAATCAATTTGCAAGTGCTTCT
CTTGACTGCAGCATCAAAGTTTGGCAGCTTGGTTCTGCAACACCAAATTTTACACTAACA
GGACATGATAAAGGCGTCAATTGCGTGGACTACTACAGTGGGGGAGACAAGCCATACCTC
ATATCTGGAGCTGATGACAGACTTACAAAGATTTGGGACTACCAGAACAAGACATGTGTT
CAGACACTAGAGGGACACTCACAGAACATTGTGTGCGTCAGCTTTCACCCTGAGCTACCA
ATCATTATGACTGGCTCTGAAGATGGCACTATTAAGATTTGGCATGCGAATACCTACCGT
CTTGAAACCACACTTAACTATGGCATGGAACGTGTGTGGTGCATATCTGCTATGAAGGGT
TCAAACAACATTGCGCTTGGATATGATGAAGGAAGTATAATGATTAAGCTTGGCAGGGAA
GAGCCAGCTATGTCCATGGATGGCAGTGGAAAGATCATATGGGCCAAGCACTCTGAGATA
CAACAAGCCAATTTGAAAGCAATGGCTGACCAGGACCTGAAGGATGGGGAGAGATTGCAG
CTATCTGTGAAAGACATGGGTAGTTGTGAGGTTTATCCACAAACACTGAAGCACAATGCA
AATGGAAGATTCGTGGTGGTTTGTGGCGATGGGGAATACATCATATACACTGCTATGGCG
CTGAGGAACAAAGCATTTGGTTCGGCTCTCGAGTTTACATGGGCGCAAGATTCATCAGAG
TATGCTGTGAGAGAAAGTGGCACTTCCGTTAAGCTGTTCAAGAATTTTAAAGAGAGAAAA
TCATTCAAGCCTGACTTCGGGGCGGAAGGAATCTTTGGGGGTCATTTGCTTGGGGTTCGA
ACCTCGCAGGGGCTTGCTTTCTATGACTGGGAGCATCTTGAACTTGTCCGCAGGATTGAG
ATCAACCCCAAAAATGTGTTTTGGTCGGACAACGGGGACCTGGTTTGCATCACCGCAGAC
GAATCGTTCTACATCCTCAAATACGATCAATCCAAGATCGAAGAATCGAAGGAAAACACC
GACCTTGTTACAGAGGATGGTATCACTGATGCATTTAGCGATGTGGAAGAAGTAGTGAAG
ACTGGTTTGTGGGTGGGTGATTGCTTCATATACACCAACGCGGTGAATCGACTGAACTAC
TATGTTGGTGGGGAGATTGTCACCATCGCTCATTTGGACAGAGTTCTGTATTTGCTGGGC
TACATTCCAAGTGATAATCGACTGTACCTTGGCGACAAGGAGCTCAATGTGGTGAGTTAC
TCCTTGCTGCTGTCCGTCCTTGAATACCAAACTGCGGTGATGAGGGAGGATTTCGAGACG
GCTGATAAAGTTCTTCCTTCCATTCCTAAAGAGCAGAGGACCAGAGTCGCTCACTTCCTC
GAGAAACAGATTGAAATTAATTTTCCACCTTACAACAAAACTGAAGTTCCTGCTACAAGA
AATTATTACTATTTGCATGGATTCAAACCTCAAGCGATGGCCGTGACCAGCGACTCGGAA
CATAAATTTGAACTCGCTCTTGGATTGGGTGACCTCAAAATAGCATACCAACTTGCACAA
GAAGCCCAGGTAATCATTTCAACACTTGTTCCAATGACTGCCGAACAAAAGTGGAAGCAG
CTTGCAGAGCTGGCAACCCGGAAATGTGAATTTGGATTAGCGCAGGAGTGTCTTCGACAG
GCACAGGATTTCGGTGGCTTGTTGTTATTAGCCACATCTGCAGGAAATTCCACCATGGTC
AAATCTCTTGCTGATAATGCCAAAGCTGGAGGCAAAAACAACGTTGCTTTCCTGAGTTAC
TTTGTCACTGGTCAAACTGACAAGTGCCTTGAACTCTTAATCAGCACCAACCGACTTCCT
GAAGCTGCCTTTTTCGCACGAACTTATTTACCCAGTCAAGTCAGCAGAGTGGTGCAACTG
TGGAAGGTGAACCTGGGTGAATCGAACAAGAAAGCTGCTGATGCACTTGCTGAT
| PIRSF |
COPB2 (IPR016453) - T[1-818] 0.0 |
| SMART |
WD40_repeat (IPR001680) - T[2-41] 0.1 - T[44-83] 0.031 - T[86-125] 1.8E-8 - T[129-169] 1.2E-7 - T[172-213] 2.8E-6 - T[216-255] 8.5E-11 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[4-295] 1.06E-79 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[9-298] 9.9E-109 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[9-264] 49.645 |
| Pfam |
WD40_repeat (IPR001680) - T[58-83] 0.22 - T[90-125] 2.3E-5 - T[130-168] 0.019 - T[175-213] 2.5E-5 - T[218-254] 4.1E-9 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[93-125] 13.55 - T[136-178] 11.31 - T[179-222] 12.146 - T[223-264] 16.223 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[112-126] 4.6E-5 - T[200-214] 4.6E-5 - T[242-256] 4.6E-5 |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[317-623] 6.7E-114 - T[633-790] 1.5E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 25.664 % | 226 | 7.36E-62 |
| COPB2_HUMAN | 75.396 % | 1339 | 0 |
| LIS1_HUMAN | 24.731 % | 110 | 8.12E-26 |